DNATCO v4.1: results

Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand

Results of the assignment of 152 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2cky_A_G1_G2	NAN	NANT	0	0.62	AAS1
002	2cky_A_G2_G3	AAA	AA00	57	0.22	AA00
003	2cky_A_G3_A4	AAA	AA00	87	0.13	AA00
004	2cky_A_A4_C5	AAA	AA00	77	0.14	AA00
005	2cky_A_C5_C6	AAA	AA00	20	0.26	AA00
006	2cky_A_C6_A7	AAA	AA00	54	0.31	AA00
007	2cky_A_A7_G8	AAA	AA08	76	0.20	AA08
008	2cky_A_G8_G9	AAA	AA03	80	0.24	AA03
009	2cky_A_G9_G10	AAA	AA04	72	0.39	AA04
010	2cky_A_G10_G11	AAA	AA00	61	0.36	AA00
011	2cky_A_G11_U12	AAA	AA00	35	0.29	AA00
012	2cky_A_U12_G13	OPN	OP01	49	0.57	OP01
013	2cky_A_G13_C14	AAA	AA04	87	0.20	AA04
014	2cky_A_C14_U15	AAA	AA04	87	0.21	AA04
015	2cky_A_U15_U16	AAA	AA04	72	0.33	AA04
016	2cky_A_U16_G17	AAA	AA00	80	0.17	AA00
017	2cky_A_G17_U18	NAN	NANT	0	0.74	OP05
018	2cky_A_U18_U19	NAN	NANT	0	0.67	IC06
019	2cky_A_U19_C20	NAN	NANT	0	1.36	BA16
020	2cky_A_C20_A21	AAA	AA08	39	0.30	AA08
021	2cky_A_A21_C22	NAN	NANT	0	0.72	AA08
022	2cky_A_C22_A23	AAA	AA08	79	0.18	AA08
023	2cky_A_A23_G24	AAA	AA03	73	0.33	AA03
024	2cky_A_G24_G25	AAA	AA00	66	0.23	AA00
025	2cky_A_G25_C26	AAA	AA00	40	0.33	AA00
026	2cky_A_C26_U27	AAA	AA00	78	0.19	AA00
027	2cky_A_U27_G28	AAA	AA08	71	0.22	AA08
028	2cky_A_G28_A29	NAN	NANT	0	0.33	OP04
029	2cky_A_A29_G30	AAA	AA08	32	0.27	AA08
030	2cky_A_G30_A31	ICL	IC01	21	0.36	IC01
031	2cky_A_A31_A32	NAN	NANT	0	1.57	OP1S
032	2cky_A_A32_A33	NAN	NANT	0	0.90	OP15
033	2cky_A_A33_G34	NAN	NANT	0	1.15	AA10
034	2cky_A_G34_U35	NAN	NANT	0	1.28	IC04
035	2cky_A_U35_C36	NAN	NANT	0	1.67	ZZS2
036	2cky_A_C36_C37	AAA	AA00	72	0.17	AA00
037	2cky_A_C37_C38	AAA	AA00	84	0.17	AA00
038	2cky_A_C38_U39	AAA	AA04	84	0.27	AA04
039	2cky_A_U39_U40	OPN	OP28	79	0.25	OP28
040	2cky_A_U40_U41	OPN	OP21	22	0.47	OP21
041	2cky_A_U41_G42	NAN	NANT	0	0.33	OP11
042	2cky_A_G42_A43	NAN	NANT	0	1.06	IC02
043	2cky_A_A43_A44	NAN	NANT	0	0.47	OP27
044	2cky_A_A44_C45	AAw	AA05	36	0.47	AA05
045	2cky_A_C45_C46	NAN	NANT	0	0.24	AA03
046	2cky_A_C46_U47	AAw	AA01	12	0.32	AA01
047	2cky_A_U47_G48	AAA	AA08	39	0.42	AA08
048	2cky_A_G48_A49	NAN	NANT	0	0.36	ZZ01
049	2cky_A_A49_A50	NAN	NANT	0	0.69	OP18
050	2cky_A_A50_C51	NAN	NANT	0	1.48	OPS1
051	2cky_A_C51_A52	AAA	AA08	9	0.49	AA08
052	2cky_A_A52_G53	NAN	NANT	0	0.63	AB02
053	2cky_A_G53_G54	AAA	AA00	74	0.16	AA00
054	2cky_A_G54_G55	NAN	NANT	0	0.28	AA04
055	2cky_A_G55_U56	AAA	AA04	76	0.23	AA04
056	2cky_A_U56_A57	OPN	OP04	54	0.18	OP04
057	2cky_A_A57_A58	AAA	AA08	61	0.27	AA08
058	2cky_A_A58_U59	AAA	AA08	40	0.26	AA08
059	2cky_A_U59_G60	NAN	NANT	0	0.42	OP03
060	2cky_A_G60_C61	NAN	NANT	0	1.20	OP30
061	2cky_A_C61_C62	AAA	AA00	40	0.31	AA00
062	2cky_A_C62_U63	AAA	AA04	87	0.24	AA04
063	2cky_A_U63_G64	NAN	NANT	0	0.60	AA11
064	2cky_A_G64_C65	NAN	NANT	0	0.56	AA04
065	2cky_A_C65_G66	NAN	NANT	0	0.36	ZZ01
066	2cky_A_G66_C67	NAN	NANT	0	1.68	OP23
067	2cky_A_C67_A68	NAN	NANT	0	1.75	OP31
068	2cky_A_A68_G69	AAw	AA01	13	0.41	AA01
069	2cky_A_G69_G70	AAA	AA08	48	0.32	AA08
070	2cky_A_G70_G71	NAN	NANT	0	0.39	AA10
071	2cky_A_G71_A72	NAN	NANT	0	0.51	AA07
072	2cky_A_A72_G73	NAN	NANT	0	1.31	IC01
073	2cky_A_G73_U74	NAN	NANT	0	1.29	OP14
074	2cky_A_U74_G75	NAN	NANT	0	1.84	OPS1
075	2cky_A_G75_U76	AAA	AA08	29	0.25	AA08
076	2cky_A_U76_C77	AAA	AA08	93	0.19	AA08
077	2cky_B_G1_G2	NAN	NANT	0	0.45	AA10
078	2cky_B_G2_G3	AAA	AA08	74	0.26	AA08
079	2cky_B_G3_A4	AAA	AA08	79	0.19	AA08
080	2cky_B_A4_C5	AAA	AA00	84	0.14	AA00
081	2cky_B_C5_C6	AAA	AA00	81	0.17	AA00
082	2cky_B_C6_A7	AAA	AA08	60	0.20	AA08
083	2cky_B_A7_G8	AAA	AA08	76	0.23	AA08
084	2cky_B_G8_G9	AAA	AA04	61	0.38	AA04
085	2cky_B_G9_G10	AAA	AA08	75	0.19	AA08
086	2cky_B_G10_G11	NAN	NANT	0	0.53	AA03
087	2cky_B_G11_U12	AAA	AA04	74	0.38	AA04
088	2cky_B_U12_G13	NAN	NANT	0	0.70	OP01
089	2cky_B_G13_C14	AAA	AA00	62	0.20	AA00
090	2cky_B_C14_U15	AAA	AA00	49	0.23	AA00
091	2cky_B_U15_U16	AAA	AA03	68	0.32	AA03
092	2cky_B_U16_G17	AAA	AA04	76	0.22	AA04
093	2cky_B_G17_U18	NAN	NANT	0	0.70	OP05
094	2cky_B_U18_U19	NAN	NANT	0	0.56	IC06
095	2cky_B_U19_C20	NAN	NANT	0	1.67	ZZ2S
096	2cky_B_C20_A21	AAA	AA03	43	0.41	AA03
097	2cky_B_A21_C22	AAA	AA08	20	0.66	AA08
098	2cky_B_C22_A23	NAN	NANT	0	0.65	AA11
099	2cky_B_A23_G24	NAN	NANT	0	0.31	AA08
100	2cky_B_G24_G25	AAA	AA04	70	0.37	AA04
101	2cky_B_G25_C26	AAA	AA03	71	0.34	AA03
102	2cky_B_C26_U27	AAA	AA00	37	0.19	AA00
103	2cky_B_U27_G28	AAA	AA08	81	0.25	AA08
104	2cky_B_G28_A29	NAN	NANT	0	0.36	OP04
105	2cky_B_A29_G30	AAA	AA08	65	0.31	AA08
106	2cky_B_G30_A31	ICL	IC01	73	0.33	IC01
107	2cky_B_A31_A32	NAN	NANT	0	1.55	OP1S
108	2cky_B_A32_A33	NAN	NANT	0	1.84	ZZS1
109	2cky_B_A33_G34	NAN	NANT	0	1.06	AA10
110	2cky_B_G34_U35	NAN	NANT	0	1.27	IC04
111	2cky_B_U35_C36	NAN	NANT	0	1.03	AA13
112	2cky_B_C36_C37	AAA	AA04	88	0.20	AA04
113	2cky_B_C37_C38	AAA	AA08	70	0.17	AA08
114	2cky_B_C38_U39	AAA	AA08	63	0.21	AA08
115	2cky_B_U39_U40	OPN	OP28	34	0.35	OP28
116	2cky_B_U40_U41	NAN	NANT	0	0.64	OP21
117	2cky_B_U41_G42	NAN	NANT	0	0.38	OP11
118	2cky_B_G42_A43	NAN	NANT	0	1.11	IC02
119	2cky_B_A43_A44	NAN	NANT	0	0.44	OP27
120	2cky_B_A44_C45	AAw	AA05	41	0.49	AA05
121	2cky_B_C45_C46	NAN	NANT	0	0.38	AA03
122	2cky_B_C46_U47	NAN	NANT	0	0.33	AA04
123	2cky_B_U47_G48	AAA	AA08	36	0.41	AA08
124	2cky_B_G48_A49	NAN	NANT	0	0.47	ZZ01
125	2cky_B_A49_A50	NAN	NANT	0	0.81	OP18
126	2cky_B_A50_C51	NAN	NANT	0	1.77	OP16
127	2cky_B_C51_A52	AAA	AA08	68	0.33	AA08
128	2cky_B_A52_G53	AAA	AA08	57	0.23	AA08
129	2cky_B_G53_G54	AAA	AA08	56	0.19	AA08
130	2cky_B_G54_G55	NAN	NANT	0	0.45	AA06
131	2cky_B_G55_U56	AAA	AA00	41	0.25	AA00
132	2cky_B_U56_A57	NAN	NANT	0	0.28	OP04
133	2cky_B_A57_A58	NAN	NANT	0	0.29	AA04
134	2cky_B_A58_U59	AAA	AA00	54	0.26	AA00
135	2cky_B_U59_G60	NAN	NANT	0	0.75	OP09
136	2cky_B_G60_C61	NAN	NANT	0	2.05	OP26
137	2cky_B_C61_C62	AAA	AA03	88	0.20	AA03
138	2cky_B_C62_U63	AAA	AA08	88	0.24	AA08
139	2cky_B_U63_G64	AAw	AA11	86	0.33	AA11
140	2cky_B_G64_C65	AAA	AA08	62	0.46	AA08
141	2cky_B_C65_G66	ZZZ	ZZ01	67	0.20	ZZ01
142	2cky_B_G66_C67	NAN	NANT	0	1.61	OP18
143	2cky_B_C67_A68	NAN	NANT	0	1.46	OP31
144	2cky_B_A68_G69	AAA	AA04	61	0.21	AA04
145	2cky_B_G69_G70	AAA	AA00	76	0.16	AA00
146	2cky_B_G70_G71	AAw	AA05	10	0.72	AA05
147	2cky_B_G71_A72	NAN	NANT	0	0.43	AA07
148	2cky_B_A72_G73	NAN	NANT	0	1.31	IC01
149	2cky_B_G73_U74	NAN	NANT	0	1.08	OP13
150	2cky_B_U74_G75	NAN	NANT	0	1.18	OP11
151	2cky_B_G75_U76	AAA	AA00	26	0.30	AA00
152	2cky_B_U76_C77	AAA	AA00	86	0.16	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 152 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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