Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2cgp_B_DG503_DT504 | BBw | BB16 | 51 | 0.66 |
| 02 | 2cgp_B_DT504_DC505 | miB | BB15 | 89 | 0.20 |
| 03 | 2cgp_B_DC505_DA506 | BBB | BB00 | 51 | 0.28 |
| 04 | 2cgp_B_DA506_DC507 | NAN | NANT | 0 | 0.57 |
| 05 | 2cgp_B_DC507_DA508 | BBB | BB00 | 63 | 0.28 |
| 06 | 2cgp_B_DA508_DT509 | BBw | BB02 | 78 | 0.23 |
| 07 | 2cgp_B_DT509_DT510 | NAN | NANT | 0 | 0.43 |
| 08 | 2cgp_B_DT510_DA511 | NAN | NANT | 0 | 0.28 |
| 09 | 2cgp_B_DA511_DA512 | BBB | BB00 | 29 | 0.40 |
| 10 | 2cgp_B_DA512_DT513 | BBB | BB00 | 54 | 0.42 |
| 11 | 2cgp_C_DA534_DT535 | NAN | NANT | 0 | 0.61 |
| 12 | 2cgp_C_DT535_DT536 | BBB | BB00 | 67 | 0.24 |
| 13 | 2cgp_C_DT536_DA537 | BBB | BB00 | 64 | 0.27 |
| 14 | 2cgp_C_DA537_DA538 | BBw | BB02 | 68 | 0.29 |
| 15 | 2cgp_C_DA538_DT539 | BBw | BB02 | 68 | 0.25 |
| 16 | 2cgp_C_DT539_DG540 | BBB | BB00 | 64 | 0.24 |
| 17 | 2cgp_C_DG540_DT541 | BBw | BB02 | 23 | 0.28 |
| 18 | 2cgp_C_DT541_DG542 | BBB | BB00 | 49 | 0.36 |
| 19 | 2cgp_C_DG542_DA543 | BBB | BB00 | 29 | 0.36 |
| 20 | 2cgp_C_DA543_DC544 | BBw | BB02 | 45 | 0.30 |
| 21 | 2cgp_C_DC544_DA545 | BBB | BB00 | 28 | 0.48 |
| 22 | 2cgp_C_DA545_DT546 | NAN | NANT | 0 | 0.39 |
| 23 | 2cgp_C_DT546_DA547 | BBB | BB00 | 45 | 0.35 |
| 24 | 2cgp_C_DA547_DT548 | BBB | BB00 | 47 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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