Conformers:
ABBIImiBZICOPNSYNN
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Refinement of RNase P P4 stemloop structure using residual dipolar couplings - cobalt(III) hexammine complex structure
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2cd5_A_G1_G2 | NAN | NANT | 0 | 0.49 |
| 02 | 2cd5_A_G2_A3 | AAA | AA00 | 65 | 0.19 |
| 03 | 2cd5_A_A3_A4 | AAA | AA00 | 44 | 0.41 |
| 04 | 2cd5_A_A4_G5 | NAN | NANT | 0 | 0.45 |
| 05 | 2cd5_A_G5_U6 | NAN | NANT | 0 | 1.33 |
| 06 | 2cd5_A_U6_C7 | NAN | NANT | 0 | 0.94 |
| 07 | 2cd5_A_C7_C8 | AAA | AA04 | 52 | 0.40 |
| 08 | 2cd5_A_C8_G9 | AAA | AA00 | 62 | 0.20 |
| 09 | 2cd5_A_G9_G10 | AAA | AA00 | 82 | 0.20 |
| 10 | 2cd5_A_G10_U11 | AAA | AA00 | 62 | 0.26 |
| 11 | 2cd5_A_U11_C12 | NAN | NANT | 0 | 0.56 |
| 12 | 2cd5_A_C12_U13 | AAA | AA04 | 39 | 0.68 |
| 13 | 2cd5_A_U13_U14 | NAN | NANT | 0 | 2.49 |
| 14 | 2cd5_A_U14_C15 | NAN | NANT | 0 | 1.02 |
| 15 | 2cd5_A_C15_G16 | NAN | NANT | 0 | 1.02 |
| 16 | 2cd5_A_G16_G17 | NAN | NANT | 0 | 0.54 |
| 17 | 2cd5_A_G17_A18 | AAA | AA00 | 58 | 0.27 |
| 18 | 2cd5_A_A18_C19 | AAA | AA00 | 79 | 0.21 |
| 19 | 2cd5_A_C19_C20 | AAA | AA00 | 45 | 0.36 |
| 20 | 2cd5_A_C20_G21 | AAA | AA00 | 32 | 0.33 |
| 21 | 2cd5_A_G21_G22 | AAA | AA08 | 67 | 0.25 |
| 22 | 2cd5_A_G22_C23 | AAA | AA08 | 47 | 0.30 |
| 23 | 2cd5_A_C23_U24 | AAA | AA08 | 57 | 0.18 |
| 24 | 2cd5_A_U24_U25 | AAA | AA00 | 55 | 0.28 |
| 25 | 2cd5_A_U25_C26 | AAA | AA00 | 63 | 0.31 |
| 26 | 2cd5_A_C26_C27 | AAw | AA01 | 43 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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