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Conformers: ABBIImiBZICOPNSYNN
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MS2-RNA HAIRPIN (2SU -5-6) COMPLEX

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012c4z_R_C2_A3AAAAA00780.22 AA00
022c4z_R_A3_U4AAAAA00440.36 AA00
032c4z_R_U4_G5AAAAA00820.19 AA00
042c4z_R_G5_A6NANNANT01.00 OP29
052c4z_R_A6_G7NANNANT00.76 OP31
062c4z_R_G7_G8AAAAA00360.30 AA00
072c4z_R_G8_A9AAAAA00560.25 AA00
082c4z_R_A9_SUR10NANNANT00.82 OP09
092c4z_R_SUR10_SUR11NANNANT00.48 OP20
102c4z_R_SUR11_A12NANNANT01.32 OP22
112c4z_R_A12_C13NANNANT00.71 OP27
122c4z_R_C13_C14AAAAA04710.35 AA04
132c4z_R_C14_C15AAAAA00660.29 AA00
142c4z_R_C15_A16AAAAA00890.14 AA00
152c4z_R_A16_U17AAAAA00690.24 AA00
162c4z_R_U17_G18AAAAA00570.25 AA00
172c4z_S_U4_G5AAAAA00840.27 AA00
182c4z_S_G5_A6NANNANT00.92 OP29
192c4z_S_A6_G7NANNANT00.79 OP31
202c4z_S_G7_G8AAuAA12630.41 AA12
212c4z_S_G8_A9AAwAA01430.32 AA01
222c4z_S_A9_SUR10NANNANT01.66 OP29
232c4z_S_SUR10_SUR11NANNANT00.53 OP20
242c4z_S_SUR11_A12NANNANT01.32 OP22
252c4z_S_A12_C13NANNANT00.53 OP27
262c4z_S_C13_C14AAAAA00890.16 AA00
272c4z_S_C14_C15AAAAA00510.32 AA00
282c4z_S_C15_A16AAAAA00290.28 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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