Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2c4y_R_C2_A3 | AAA | AA08 | 85 | 0.14 |
| 02 | 2c4y_R_A3_U4 | AAA | AA00 | 73 | 0.27 |
| 03 | 2c4y_R_U4_G5 | AAA | AA00 | 90 | 0.14 |
| 04 | 2c4y_R_G5_A6 | NAN | NANT | 0 | 0.96 |
| 05 | 2c4y_R_A6_G7 | NAN | NANT | 0 | 0.78 |
| 06 | 2c4y_R_G7_G8 | AAA | AA00 | 52 | 0.23 |
| 07 | 2c4y_R_G8_A9 | AAA | AA00 | 69 | 0.23 |
| 08 | 2c4y_R_A9_U10 | NAN | NANT | 0 | 0.58 |
| 09 | 2c4y_R_U10_SUR11 | NAN | NANT | 0 | 0.46 |
| 10 | 2c4y_R_SUR11_A12 | NAN | NANT | 0 | 1.30 |
| 11 | 2c4y_R_A12_C13 | NAN | NANT | 0 | 0.63 |
| 12 | 2c4y_R_C13_C14 | AAA | AA00 | 94 | 0.15 |
| 13 | 2c4y_R_C14_C15 | AAA | AA00 | 85 | 0.24 |
| 14 | 2c4y_R_C15_A16 | AAA | AA00 | 98 | 0.12 |
| 15 | 2c4y_R_A16_U17 | AAA | AA00 | 84 | 0.17 |
| 16 | 2c4y_R_U17_G18 | AAA | AA00 | 48 | 0.25 |
| 17 | 2c4y_S_U4_G5 | AAA | AA00 | 82 | 0.26 |
| 18 | 2c4y_S_G5_A6 | NAN | NANT | 0 | 0.87 |
| 19 | 2c4y_S_A6_G7 | NAN | NANT | 0 | 0.80 |
| 20 | 2c4y_S_G7_G8 | AAA | AA00 | 22 | 0.36 |
| 21 | 2c4y_S_G8_A9 | AAw | AA01 | 26 | 0.33 |
| 22 | 2c4y_S_A9_U10 | NAN | NANT | 0 | 0.62 |
| 23 | 2c4y_S_U10_SUR11 | NAN | NANT | 0 | 0.47 |
| 24 | 2c4y_S_SUR11_A12 | NAN | NANT | 0 | 1.28 |
| 25 | 2c4y_S_A12_C13 | NAN | NANT | 0 | 0.51 |
| 26 | 2c4y_S_C13_C14 | AAA | AA00 | 87 | 0.18 |
| 27 | 2c4y_S_C14_C15 | AAA | AA00 | 48 | 0.30 |
| 28 | 2c4y_S_C15_A16 | AAA | AA00 | 64 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|