Conformers:
ABBIImiBZICOPNSYNN
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Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2c2d_P_DG1_DG2 | BBB | BB00 | 84 | 0.22 |
| 02 | 2c2d_P_DG2_DG3 | BB2 | BB07 | 81 | 0.27 |
| 03 | 2c2d_P_DG3_DG4 | NAN | NANT | 0 | 0.42 |
| 04 | 2c2d_P_DG4_DG5 | BBw | BB02 | 13 | 0.47 |
| 05 | 2c2d_P_DG5_DA6 | BBB | BB00 | 67 | 0.38 |
| 06 | 2c2d_P_DA6_DA7 | BBB | BB00 | 62 | 0.18 |
| 07 | 2c2d_P_DA7_DG8 | BBB | BB00 | 64 | 0.35 |
| 08 | 2c2d_P_DG8_DG9 | BBB | BB00 | 69 | 0.30 |
| 09 | 2c2d_P_DG9_DA10 | BBB | BB00 | 80 | 0.27 |
| 10 | 2c2d_P_DA10_DT11 | BBw | BB02 | 57 | 0.22 |
| 11 | 2c2d_P_DT11_DT12 | BBB | BB00 | 54 | 0.18 |
| 12 | 2c2d_P_DT12_DC13 | BBB | BB00 | 81 | 0.36 |
| 13 | 2c2d_T_DC4_8OG5 | NAN | NANT | 0 | 1.02 |
| 14 | 2c2d_T_8OG5_DG6 | SYN | BBS1 | 59 | 0.30 |
| 15 | 2c2d_T_DG6_DA7 | B12 | BB04 | 76 | 0.21 |
| 16 | 2c2d_T_DA7_DA8 | BBB | BB01 | 68 | 0.17 |
| 17 | 2c2d_T_DA8_DT9 | BBB | BB00 | 37 | 0.36 |
| 18 | 2c2d_T_DT9_DC10 | BBB | BB00 | 49 | 0.25 |
| 19 | 2c2d_T_DC10_DC11 | BBw | BB11 | 82 | 0.34 |
| 20 | 2c2d_T_DC11_DT12 | miB | BB10 | 12 | 0.31 |
| 21 | 2c2d_T_DT12_DT13 | BBB | BB00 | 80 | 0.21 |
| 22 | 2c2d_T_DT13_DC14 | BBB | BB00 | 85 | 0.24 |
| 23 | 2c2d_T_DC14_DC15 | BBB | BB00 | 84 | 0.24 |
| 24 | 2c2d_T_DC15_DC16 | BBB | BB00 | 81 | 0.31 |
| 25 | 2c2d_T_DC16_DC17 | BBB | BB00 | 85 | 0.24 |
| 26 | 2c2d_T_DC17_DC18 | BB2 | BB07 | 56 | 0.34 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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