Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MS2-RNA HAIRPIN (5BRU -5) COMPLEX

Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012bu1_R_C2_A3NANNANT00.91 AB02
022bu1_R_A3_U4AAAAA00730.19 AA00
032bu1_R_U4_G5AAAAA00830.15 AA00
042bu1_R_G5_A6NANNANT00.98 OP29
052bu1_R_A6_G7NANNANT00.76 OP31
062bu1_R_G7_G8AAAAA08570.26 AA08
072bu1_R_G8_A9AAAAA00790.22 AA00
082bu1_R_A9_U10OPNOP09810.35 OP09
092bu1_R_U10_5BU11NANNANT00.42 OP20
102bu1_R_5BU11_A12NANNANT01.26 OP22
112bu1_R_A12_C13NANNANT00.57 OP27
122bu1_R_C13_C14AAAAA00970.15 AA00
132bu1_R_C14_C15AAAAA00850.24 AA00
142bu1_R_C15_A16AAAAA00960.11 AA00
152bu1_R_A16_U17AAAAA00880.15 AA00
162bu1_R_U17_G18AAAAA00880.23 AA00
172bu1_S_C2_A3NANNANT00.85 AB02
182bu1_S_A3_U4AAAAA00480.27 AA00
192bu1_S_U4_G5AAAAA00840.15 AA00
202bu1_S_G5_A6NANNANT00.95 OP29
212bu1_S_A6_G7NANNANT00.72 OP31
222bu1_S_G7_G8AAAAA08480.34 AA08
232bu1_S_G8_A9AAAAA00860.27 AA00
242bu1_S_A9_U10OPNOP09480.31 OP09
252bu1_S_U10_5BU11NANNANT00.30 OP20
262bu1_S_5BU11_A12NANNANT01.34 OP22
272bu1_S_A12_C13NANNANT00.56 OP27
282bu1_S_C13_C14AAAAA00920.12 AA00
292bu1_S_C14_C15AAAAA00500.32 AA00
302bu1_S_C15_A16AAAAA00800.15 AA00
312bu1_S_A16_U17AAAAA00830.17 AA00
322bu1_S_U17_G18AAAAA00790.24 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N