Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MS2 (N87AE89K mutant) - RNA hairpin complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2bq5_R_A1_C2 | NAN | NANT | 0 | 0.42 |
| 02 | 2bq5_R_C2_A3 | AAA | AA00 | 54 | 0.44 |
| 03 | 2bq5_R_A3_U4 | AAA | AA00 | 89 | 0.15 |
| 04 | 2bq5_R_U4_G5 | AAA | AA00 | 83 | 0.18 |
| 05 | 2bq5_R_G5_A6 | NAN | NANT | 0 | 1.06 |
| 06 | 2bq5_R_A6_G7 | NAN | NANT | 0 | 0.74 |
| 07 | 2bq5_R_G7_G8 | AAA | AA00 | 55 | 0.25 |
| 08 | 2bq5_R_G8_A9 | AAA | AA00 | 60 | 0.27 |
| 09 | 2bq5_R_A9_U10 | NAN | NANT | 0 | 2.18 |
| 10 | 2bq5_R_U10_U11 | NAN | NANT | 0 | 0.60 |
| 11 | 2bq5_R_U11_A12 | NAN | NANT | 0 | 2.16 |
| 12 | 2bq5_R_A12_C13 | OPN | OP27 | 7 | 0.65 |
| 13 | 2bq5_R_C13_C14 | AAA | AA00 | 93 | 0.15 |
| 14 | 2bq5_R_C14_C15 | AAA | AA00 | 78 | 0.25 |
| 15 | 2bq5_R_C15_A16 | AAA | AA00 | 83 | 0.14 |
| 16 | 2bq5_R_A16_U17 | AAA | AA00 | 77 | 0.17 |
| 17 | 2bq5_R_U17_G18 | AAA | AA00 | 87 | 0.17 |
| 18 | 2bq5_R_G18_U19 | AAA | AA00 | 74 | 0.18 |
| 19 | 2bq5_S_C2_A3 | AAA | AA04 | 74 | 0.32 |
| 20 | 2bq5_S_A3_U4 | AAA | AA00 | 18 | 0.38 |
| 21 | 2bq5_S_U4_G5 | AAA | AA00 | 60 | 0.23 |
| 22 | 2bq5_S_G5_A6 | NAN | NANT | 0 | 0.94 |
| 23 | 2bq5_S_A6_G7 | NAN | NANT | 0 | 0.78 |
| 24 | 2bq5_S_G7_G8 | AAu | AA12 | 59 | 0.32 |
| 25 | 2bq5_S_G8_A9 | AAA | AA00 | 55 | 0.41 |
| 26 | 2bq5_S_A9_U10 | OPN | OP09 | 22 | 0.41 |
| 27 | 2bq5_S_U10_U11 | NAN | NANT | 0 | 0.45 |
| 28 | 2bq5_S_U11_A12 | NAN | NANT | 0 | 2.21 |
| 29 | 2bq5_S_A12_C13 | NAN | NANT | 0 | 0.58 |
| 30 | 2bq5_S_C13_C14 | AAA | AA00 | 84 | 0.14 |
| 31 | 2bq5_S_C14_C15 | AAA | AA00 | 76 | 0.27 |
| 32 | 2bq5_S_C15_A16 | AAA | AA00 | 86 | 0.17 |
| 33 | 2bq5_S_A16_U17 | AAA | AA00 | 58 | 0.27 |
| 34 | 2bq5_S_U17_G18 | NAN | NANT | 0 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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