Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE AT 1.7 ANGSTROMS OF THE BOVINE PAPILLOMAVIRUS-1 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2bop_B_DC1_DC2 | B-A | BA05 | 72 | 0.13 |
| 02 | 2bop_B_DC2_DG3 | A-B | AB01 | 68 | 0.28 |
| 03 | 2bop_B_DG3_DA4 | BB2 | BB07 | 79 | 0.32 |
| 04 | 2bop_B_DA4_DC5 | B-A | BA05 | 70 | 0.23 |
| 05 | 2bop_B_DC5_DC6 | AAA | AA02 | 55 | 0.44 |
| 06 | 2bop_B_DC6_DG7 | A-B | AB01 | 68 | 0.26 |
| 07 | 2bop_B_DG7_DA8 | BBB | BB00 | 85 | 0.26 |
| 08 | 2bop_B_DA8_DC9 | BBB | BB00 | 90 | 0.16 |
| 09 | 2bop_B_DC9_DG10 | BB2 | BB07 | 43 | 0.18 |
| 10 | 2bop_B_DG10_DT11 | BB2 | BB07 | 45 | 0.24 |
| 11 | 2bop_B_DT11_DC12 | NAN | NANT | 0 | 0.33 |
| 12 | 2bop_B_DC12_DG13 | A-B | AB01 | 14 | 0.19 |
| 13 | 2bop_B_DG13_DG14 | B-A | BA05 | 83 | 0.25 |
| 14 | 2bop_B_DG14_DT15 | BBB | BB01 | 32 | 0.30 |
| 15 | 2bop_B_DT15_DC16 | BBB | BB00 | 77 | 0.25 |
| 16 | 2bop_B_DC16_DG17 | BB2 | BB07 | 25 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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