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Conformers: ABBIImiBZICOPNSYNN
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MS2 (N87A mutant) - RNA hairpin complex

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012bny_R_A3_U4AAAAA00770.23 AA00
022bny_R_U4_G5AAAAA00900.13 AA00
032bny_R_G5_A6NANNANT00.94 OP29
042bny_R_A6_G7NANNANT00.78 OP31
052bny_R_G7_G8AAAAA00480.26 AA00
062bny_R_G8_A9AAAAA00560.29 AA00
072bny_R_A9_U10NANNANT00.39 OP09
082bny_R_U10_U11NANNANT00.76 OP12
092bny_R_U11_A12NANNANT01.30 OP22
102bny_R_A12_C13NANNANT00.58 OP27
112bny_R_C13_C14AAAAA00840.15 AA00
122bny_R_C14_C15AAAAA00850.23 AA00
132bny_R_C15_A16AAAAA00930.12 AA00
142bny_R_A16_U17AAAAA00840.16 AA00
152bny_S_U4_G5AAAAA00690.26 AA00
162bny_S_G5_A6NANNANT00.90 OP29
172bny_S_A6_G7NANNANT00.78 OP31
182bny_S_G7_G8AAAAA00240.35 AA00
192bny_S_G8_A9AAAAA00710.27 AA00
202bny_S_A9_U10NANNANT00.27 OP09
212bny_S_U10_U11NANNANT01.50 IC04
222bny_S_U11_A12NANNANT00.58 OP16
232bny_S_A12_C13NANNANT00.54 OP27
242bny_S_C13_C14AAAAA00720.21 AA00
252bny_S_C14_C15AAAAA00570.32 AA00
262bny_S_C15_A16AAAAA04430.50 AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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