Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of a decameric HNA-RNA hybrid
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2bj6_E_G1_G2 | AAA | AA00 | 54 | 0.17 |
| 02 | 2bj6_E_G2_C3 | AAA | AA00 | 85 | 0.21 |
| 03 | 2bj6_E_C3_A4 | AAA | AA00 | 87 | 0.16 |
| 04 | 2bj6_E_A4_U5 | AAA | AA00 | 88 | 0.22 |
| 05 | 2bj6_E_U5_U6 | AAA | AA00 | 37 | 0.38 |
| 06 | 2bj6_E_U6_A7 | AAA | AA00 | 94 | 0.12 |
| 07 | 2bj6_E_A7_C8 | AAA | AA00 | 87 | 0.20 |
| 08 | 2bj6_E_C8_G9 | AAA | AA00 | 74 | 0.25 |
| 09 | 2bj6_E_G9_G10 | AAA | AA00 | 85 | 0.22 |
| 10 | 2bj6_F_G1_G2 | AAA | AA00 | 70 | 0.13 |
| 11 | 2bj6_F_G2_C3 | AAA | AA00 | 59 | 0.25 |
| 12 | 2bj6_F_C3_A4 | AAA | AA00 | 95 | 0.14 |
| 13 | 2bj6_F_A4_U5 | AAA | AA00 | 83 | 0.22 |
| 14 | 2bj6_F_U5_U6 | AAA | AA00 | 66 | 0.35 |
| 15 | 2bj6_F_U6_A7 | AAA | AA00 | 28 | 0.36 |
| 16 | 2bj6_F_A7_C8 | AAw | AA01 | 78 | 0.15 |
| 17 | 2bj6_F_C8_G9 | AAA | AA00 | 84 | 0.20 |
| 18 | 2bj6_F_G9_G10 | AAA | AA00 | 90 | 0.22 |
| 19 | 2bj6_G_G1_G2 | AAA | AA00 | 77 | 0.19 |
| 20 | 2bj6_G_G2_C3 | AAA | AA00 | 90 | 0.17 |
| 21 | 2bj6_G_C3_A4 | AAA | AA00 | 87 | 0.16 |
| 22 | 2bj6_G_A4_U5 | AAA | AA00 | 61 | 0.34 |
| 23 | 2bj6_G_U5_U6 | AAw | AA10 | 92 | 0.20 |
| 24 | 2bj6_G_U6_A7 | AAA | AA00 | 35 | 0.28 |
| 25 | 2bj6_G_A7_C8 | AAA | AA00 | 61 | 0.23 |
| 26 | 2bj6_G_C8_G9 | AAA | AA00 | 55 | 0.30 |
| 27 | 2bj6_G_G9_G10 | AAA | AA00 | 44 | 0.38 |
| 28 | 2bj6_H_G1_G2 | AAA | AA00 | 45 | 0.23 |
| 29 | 2bj6_H_G2_C3 | AAA | AA00 | 94 | 0.08 |
| 30 | 2bj6_H_C3_A4 | AAA | AA00 | 68 | 0.21 |
| 31 | 2bj6_H_A4_U5 | AAA | AA00 | 72 | 0.32 |
| 32 | 2bj6_H_U5_U6 | AAA | AA00 | 29 | 0.40 |
| 33 | 2bj6_H_U6_A7 | AAA | AA04 | 92 | 0.12 |
| 34 | 2bj6_H_A7_C8 | AAA | AA00 | 62 | 0.26 |
| 35 | 2bj6_H_C8_G9 | AAA | AA00 | 83 | 0.20 |
| 36 | 2bj6_H_G9_G10 | AAA | AA00 | 80 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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