Conformers:
ABBIImiBZICOPNSYNN
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RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2bj2_A_G1_G2 | AAA | AA00 | 67 | 0.23 |
| 02 | 2bj2_A_G2_C3 | AAA | AA00 | 56 | 0.33 |
| 03 | 2bj2_A_C3_A4 | AAA | AA00 | 66 | 0.24 |
| 04 | 2bj2_A_A4_A5 | AAA | AA00 | 51 | 0.20 |
| 05 | 2bj2_A_A5_C6 | AAA | AA00 | 61 | 0.18 |
| 06 | 2bj2_A_C6_G7 | AAA | AA00 | 63 | 0.26 |
| 07 | 2bj2_A_G7_G8 | NAN | NANT | 0 | 1.52 |
| 08 | 2bj2_A_G8_A9 | NAN | NANT | 0 | 0.67 |
| 09 | 2bj2_A_A9_U10 | AAA | AA08 | 17 | 0.50 |
| 10 | 2bj2_A_U10_G11 | AAA | AA08 | 77 | 0.37 |
| 11 | 2bj2_A_G11_G12 | AAA | AA00 | 25 | 0.28 |
| 12 | 2bj2_A_G12_U13 | AAA | AA00 | 37 | 0.26 |
| 13 | 2bj2_A_U13_U14 | AAA | AA00 | 48 | 0.37 |
| 14 | 2bj2_A_U14_C15 | AAA | AA00 | 49 | 0.35 |
| 15 | 2bj2_A_C15_G16 | AAA | AA00 | 53 | 0.21 |
| 16 | 2bj2_A_G16_U17 | AAA | AA00 | 48 | 0.21 |
| 17 | 2bj2_A_U17_U18 | AAA | AA00 | 54 | 0.29 |
| 18 | 2bj2_A_U18_G19 | AAA | AA00 | 54 | 0.19 |
| 19 | 2bj2_A_G19_C20 | AAA | AA00 | 53 | 0.21 |
| 20 | 2bj2_A_C20_C21 | AAA | AA00 | 66 | 0.17 |
| 21 | 2bj2_B_G1_C2 | AAA | AA00 | 21 | 0.44 |
| 22 | 2bj2_B_C2_A3 | AAA | AA00 | 35 | 0.33 |
| 23 | 2bj2_B_A3_C4 | AAA | AA00 | 48 | 0.21 |
| 24 | 2bj2_B_C4_C5 | AAA | AA00 | 52 | 0.30 |
| 25 | 2bj2_B_C5_G6 | AAA | AA00 | 73 | 0.21 |
| 26 | 2bj2_B_G6_A7 | NAN | NANT | 0 | 1.79 |
| 27 | 2bj2_B_A7_A8 | AAA | AA08 | 14 | 0.46 |
| 28 | 2bj2_B_A8_C9 | AAA | AA00 | 44 | 0.27 |
| 29 | 2bj2_B_C9_C10 | AAA | AA00 | 17 | 0.45 |
| 30 | 2bj2_B_C10_A11 | AAA | AA00 | 42 | 0.32 |
| 31 | 2bj2_B_A11_U12 | AAA | AA00 | 54 | 0.21 |
| 32 | 2bj2_B_U12_C13 | AAA | AA00 | 75 | 0.25 |
| 33 | 2bj2_B_C13_C14 | AAA | AA00 | 27 | 0.35 |
| 34 | 2bj2_B_C14_G15 | AAA | AA00 | 49 | 0.27 |
| 35 | 2bj2_B_G15_G16 | AAA | AA00 | 42 | 0.24 |
| 36 | 2bj2_B_G16_U17 | AAA | AA00 | 57 | 0.26 |
| 37 | 2bj2_B_U17_G18 | AAA | AA00 | 70 | 0.24 |
| 38 | 2bj2_B_G18_C19 | AAA | AA00 | 26 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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