Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The structure of a Piwi protein from Archaeoglobus fulgidus complexed with a 16nt siRNA duplex.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2bgg_P_U1_U2 | NAN | NANT | 0 | 0.96 |
| 02 | 2bgg_P_U2_C3 | AAw | AA01 | 67 | 0.27 |
| 03 | 2bgg_P_C3_G4 | AAA | AA00 | 67 | 0.15 |
| 04 | 2bgg_P_G4_A5 | AAA | AA08 | 64 | 0.25 |
| 05 | 2bgg_P_A5_C6 | AAw | AA06 | 85 | 0.20 |
| 06 | 2bgg_P_C6_G7 | AAA | AA08 | 77 | 0.32 |
| 07 | 2bgg_P_G7_C8 | AAA | AA03 | 70 | 0.20 |
| 08 | 2bgg_Q_G9_U10 | AAA | AA04 | 28 | 0.43 |
| 09 | 2bgg_Q_U10_C11 | AAw | AA11 | 40 | 0.48 |
| 10 | 2bgg_Q_C11_G12 | AAA | AA08 | 45 | 0.28 |
| 11 | 2bgg_Q_G12_A13 | AAA | AA03 | 65 | 0.31 |
| 12 | 2bgg_Q_A13_A14 | NAN | NANT | 0 | 0.22 |
| 13 | 2bgg_Q_A14_U15 | AAA | AA08 | 55 | 0.41 |
| 14 | 2bgg_Q_U15_U16 | NAN | NANT | 0 | 2.08 |
| 15 | 2bgg_R_U1_U2 | NAN | NANT | 0 | 0.96 |
| 16 | 2bgg_R_U2_C3 | AAw | AA01 | 67 | 0.29 |
| 17 | 2bgg_R_C3_G4 | AAA | AA00 | 84 | 0.26 |
| 18 | 2bgg_R_G4_A5 | AAA | AA03 | 43 | 0.14 |
| 19 | 2bgg_R_A5_C6 | AAw | AA06 | 23 | 0.26 |
| 20 | 2bgg_R_C6_G7 | AAw | AA01 | 16 | 0.44 |
| 21 | 2bgg_R_G7_C8 | NAN | NANT | 0 | 0.90 |
| 22 | 2bgg_S_G9_U10 | NAN | NANT | 0 | 0.38 |
| 23 | 2bgg_S_U10_C11 | AAA | AA08 | 59 | 0.28 |
| 24 | 2bgg_S_C11_G12 | AAA | AA00 | 58 | 0.27 |
| 25 | 2bgg_S_G12_A13 | AAA | AA00 | 72 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|