Conformers:
ABBIImiBZICOPNSYNN
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Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2bee_A_G1_C2 | AAw | AA01 | 60 | 0.31 |
| 02 | 2bee_A_C2_G3 | AAA | AA08 | 90 | 0.23 |
| 03 | 2bee_A_G3_U4 | AAA | AA00 | 82 | 0.26 |
| 04 | 2bee_A_U4_C5 | AAA | AA00 | 85 | 0.20 |
| 05 | 2bee_A_C5_A6 | AAA | AA00 | 94 | 0.18 |
| 06 | 2bee_A_A6_C7 | AAA | AA00 | 78 | 0.22 |
| 07 | 2bee_A_C7_A8 | AAA | AA08 | 87 | 0.11 |
| 08 | 2bee_A_A8_C9 | AAA | AA00 | 88 | 0.09 |
| 09 | 2bee_A_C9_C10 | AAA | AA00 | 79 | 0.12 |
| 10 | 2bee_A_C10_G11 | AAA | AA00 | 93 | 0.14 |
| 11 | 2bee_A_G11_G12 | AAA | AA00 | 80 | 0.13 |
| 12 | 2bee_A_G12_U13 | AAA | AA00 | 92 | 0.16 |
| 13 | 2bee_A_U13_G14 | AAA | AA00 | 90 | 0.14 |
| 14 | 2bee_A_G14_A15 | NAN | NANT | 0 | 1.95 |
| 15 | 2bee_A_A15_A16 | NAN | NANT | 0 | 0.47 |
| 16 | 2bee_A_A16_G17 | NAN | NANT | 0 | 0.90 |
| 17 | 2bee_A_G17_U18 | NAN | NANT | 0 | 0.67 |
| 18 | 2bee_A_U18_C19 | AAA | AA08 | 85 | 0.19 |
| 19 | 2bee_A_C19_G20 | AAA | AA00 | 63 | 0.26 |
| 20 | 2bee_A_G20_C21 | AAw | AA01 | 65 | 0.22 |
| 21 | 2bee_B_G22_C23 | AAw | AA01 | 62 | 0.31 |
| 22 | 2bee_B_C23_G24 | AAA | AA08 | 83 | 0.25 |
| 23 | 2bee_B_G24_U25 | AAA | AA00 | 79 | 0.26 |
| 24 | 2bee_B_U25_C26 | AAA | AA00 | 85 | 0.20 |
| 25 | 2bee_B_C26_A27 | AAA | AA00 | 90 | 0.20 |
| 26 | 2bee_B_A27_C28 | AAA | AA00 | 80 | 0.21 |
| 27 | 2bee_B_C28_A29 | AAA | AA00 | 78 | 0.09 |
| 28 | 2bee_B_A29_C30 | AAA | AA00 | 83 | 0.08 |
| 29 | 2bee_B_C30_C31 | AAA | AA00 | 85 | 0.16 |
| 30 | 2bee_B_C31_G32 | AAA | AA00 | 87 | 0.17 |
| 31 | 2bee_B_G32_G33 | AAA | AA08 | 80 | 0.21 |
| 32 | 2bee_B_G33_U34 | AAA | AA00 | 76 | 0.12 |
| 33 | 2bee_B_U34_G35 | AAA | AA00 | 79 | 0.18 |
| 34 | 2bee_B_G35_A36 | NAN | NANT | 0 | 1.95 |
| 35 | 2bee_B_A36_A37 | NAN | NANT | 0 | 0.49 |
| 36 | 2bee_B_A37_G38 | NAN | NANT | 0 | 0.88 |
| 37 | 2bee_B_G38_U39 | NAN | NANT | 0 | 0.63 |
| 38 | 2bee_B_U39_C40 | AAA | AA08 | 87 | 0.20 |
| 39 | 2bee_B_C40_G41 | AAA | AA00 | 38 | 0.30 |
| 40 | 2bee_B_G41_C42 | AAw | AA01 | 72 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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