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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012bdp_P_DG8_DC9BBBBB00840.19 BB00
022bdp_P_DC9_DA10BBBBB00870.23 BB00
032bdp_P_DA10_DT11BBBBB00880.16 BB00
042bdp_P_DT11_DG12BBBBB00670.22 BB00
052bdp_P_DG12_DA13B-ABA08840.21 BA08
062bdp_P_DA13_DT14AAAAA00900.17 AA00
072bdp_P_DT14_DG15AAAAA00820.19 AA00
082bdp_P_DG15_DC16A-BAB05900.16 AB05
092bdp_T_DA26_DG27NANNANT01.35 OP15
102bdp_T_DG27_DC28AAAAA00870.23 AA00
112bdp_T_DC28_DA29AAwAA01920.14 AA01
122bdp_T_DA29_DT30A-BAB04890.15 AB04
132bdp_T_DT30_DC31BBBBB00930.11 BB00
142bdp_T_DC31_DA32BBBBB00880.23 BB00
152bdp_T_DA32_DT33B-ABA01940.16 BA01
162bdp_T_DT33_DG34A-BAB01870.25 AB01
172bdp_T_DG34_DC35BBBBB00810.24 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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