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Conformers: ABBIImiBZICOPNSYNN
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Structure oF HIV-1(LAI) genomic RNA DIS

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012b8r_A_C1_U2AAAAA00700.16 AA00
022b8r_A_U2_U3AAAAA00920.16 AA00
032b8r_A_U3_G4AAAAA00880.16 AA00
042b8r_A_G4_C5AAAAA00910.15 AA00
052b8r_A_C5_U6AAAAA00660.40 AA00
062b8r_A_U6_G7A-BAB05700.34 AB05
072b8r_A_G7_A8NANNANT00.76 OP17
082b8r_A_A8_A9A-BAB05590.36 AB05
092b8r_A_A9_G10NANNANT00.61 OP21
102b8r_A_G10_C11AAAAA00920.10 AA00
112b8r_A_C11_G12AAAAA00480.29 AA00
122b8r_A_G12_C13AAAAA00290.18 AA00
132b8r_A_C13_G14AAAAA00880.17 AA00
142b8r_A_G14_C15AAAAA00910.14 AA00
152b8r_A_C15_A16AAAAA00870.23 AA00
162b8r_A_A16_C17AAAAA00830.23 AA00
172b8r_A_C17_G18AAAAA00890.17 AA00
182b8r_A_G18_G19AAAAA00900.18 AA00
192b8r_A_G19_C20AAAAA00540.24 AA00
202b8r_A_C20_A21AAwAA01850.15 AA01
212b8r_A_A21_A22AAAAA08920.08 AA08
222b8r_A_A22_G23AAAAA00890.17 AA00
232b8r_B_C1_U2AAAAA00870.17 AA00
242b8r_B_U2_U3AAAAA00510.13 AA00
252b8r_B_U3_G4AAAAA08860.16 AA08
262b8r_B_G4_C5AAAAA08900.15 AA08
272b8r_B_C5_U6AAAAA00790.32 AA00
282b8r_B_U6_G7A-BAB05660.35 AB05
292b8r_B_G7_A8NANNANT00.73 OP17
302b8r_B_A8_A9A-BAB05620.34 AB05
312b8r_B_A9_G10NANNANT00.68 OP21
322b8r_B_G10_C11AAAAA00810.14 AA00
332b8r_B_C11_G12AAAAA00430.29 AA00
342b8r_B_G12_C13AAAAA00910.12 AA00
352b8r_B_C13_G14AAAAA00660.29 AA00
362b8r_B_G14_C15AAAAA00870.18 AA00
372b8r_B_C15_A16AAAAA00920.22 AA00
382b8r_B_A16_C17AAAAA00900.19 AA00
392b8r_B_C17_G18AAAAA00920.16 AA00
402b8r_B_G18_G19AAAAA00830.22 AA00
412b8r_B_G19_C20AAAAA00620.22 AA00
422b8r_B_C20_A21AAwAA01690.20 AA01
432b8r_B_A21_A22AAAAA08980.12 AA08
442b8r_B_A22_G23AAAAA00950.16 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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