Conformers:
ABBIImiBZICOPNSYNN
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RNA recognition by the Vts1 SAM domain
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2b6g_B_G1_G2 | AAA | AA00 | 37 | 0.32 |
| 02 | 2b6g_B_G2_A3 | AAA | AA00 | 93 | 0.22 |
| 03 | 2b6g_B_A3_G4 | AAA | AA00 | 76 | 0.18 |
| 04 | 2b6g_B_G4_G5 | AAA | AA00 | 76 | 0.21 |
| 05 | 2b6g_B_G5_C6 | AAA | AA00 | 67 | 0.23 |
| 06 | 2b6g_B_C6_U7 | AAA | AA00 | 23 | 0.30 |
| 07 | 2b6g_B_U7_C8 | NAN | NANT | 0 | 0.33 |
| 08 | 2b6g_B_C8_U9 | NAN | NANT | 0 | 1.40 |
| 09 | 2b6g_B_U9_G10 | NAN | NANT | 0 | 1.29 |
| 10 | 2b6g_B_G10_G11 | NAN | NANT | 0 | 1.14 |
| 11 | 2b6g_B_G11_C12 | NAN | NANT | 0 | 1.68 |
| 12 | 2b6g_B_C12_A13 | NAN | NANT | 0 | 0.54 |
| 13 | 2b6g_B_A13_G14 | AAA | AA00 | 69 | 0.22 |
| 14 | 2b6g_B_G14_C15 | AAA | AA00 | 95 | 0.20 |
| 15 | 2b6g_B_C15_U16 | AAA | AA00 | 67 | 0.40 |
| 16 | 2b6g_B_U16_U17 | AAA | AA00 | 62 | 0.34 |
| 17 | 2b6g_B_U17_U18 | AAA | AA00 | 62 | 0.42 |
| 18 | 2b6g_B_U18_C19 | AAA | AA00 | 24 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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