Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Complete RNA Polymerase II-RNA inhibitor complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2b63_R_C2_A3 | NAN | NANT | 0 | 1.39 |
| 02 | 2b63_R_A3_G4 | NAN | NANT | 0 | 0.44 |
| 03 | 2b63_R_G4_C5 | NAN | NANT | 0 | 0.61 |
| 04 | 2b63_R_C5_A6 | NAN | NANT | 0 | 1.03 |
| 05 | 2b63_R_A6_C7 | NAN | NANT | 0 | 1.47 |
| 06 | 2b63_R_C7_U8 | NAN | NANT | 0 | 2.09 |
| 07 | 2b63_R_U8_G9 | NAN | NANT | 0 | 1.04 |
| 08 | 2b63_R_G9_A10 | NAN | NANT | 0 | 1.84 |
| 09 | 2b63_R_A10_U11 | NAN | NANT | 0 | 0.95 |
| 10 | 2b63_R_U11_5BU12 | NAN | NANT | 0 | 1.90 |
| 11 | 2b63_R_5BU12_G13 | NAN | NANT | 0 | 0.69 |
| 12 | 2b63_R_G13_C14 | AAA | AA00 | 65 | 0.21 |
| 13 | 2b63_R_C14_G15 | AAA | AA08 | 57 | 0.43 |
| 14 | 2b63_R_G15_G16 | AAA | AA00 | 77 | 0.27 |
| 15 | 2b63_R_G16_5BU17 | AAA | AA00 | 34 | 0.35 |
| 16 | 2b63_R_5BU17_C18 | AAA | AA00 | 35 | 0.28 |
| 17 | 2b63_R_C18_G19 | AAA | AA00 | 33 | 0.29 |
| 18 | 2b63_R_G19_A20 | AAA | AA00 | 63 | 0.22 |
| 19 | 2b63_R_A20_G21 | AAA | AA00 | 38 | 0.25 |
| 20 | 2b63_R_G21_G22 | AAA | AA08 | 7 | 0.46 |
| 21 | 2b63_R_G22_U23 | NAN | NANT | 0 | 0.42 |
| 22 | 2b63_R_U23_A24 | NAN | NANT | 0 | 0.78 |
| 23 | 2b63_R_A24_G25 | NAN | NANT | 0 | 0.85 |
| 24 | 2b63_R_G25_C26 | NAN | NANT | 0 | 1.60 |
| 25 | 2b63_R_C26_5BU27 | NAN | NANT | 0 | 0.46 |
| 26 | 2b63_R_5BU27_5BU28 | NAN | NANT | 0 | 0.70 |
| 27 | 2b63_R_5BU28_G29 | NAN | NANT | 0 | 0.92 |
| 28 | 2b63_R_G29_A30 | AAA | AA00 | 79 | 0.25 |
| 29 | 2b63_R_A30_U31 | AAw | AA06 | 40 | 0.49 |
| 30 | 2b63_R_U31_G32 | NAN | NANT | 0 | 0.81 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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