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Conformers: ABBIImiBZICOPNSYNN
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Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine

Results of the assignment of 64 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012b57_A_G16_A17AAAAA00650.20 AA00
022b57_A_A17_C18AAwAA01720.19 AA01
032b57_A_C18_A19AAAAA08710.18 AA08
042b57_A_A19_U20AAAAA00930.12 AA00
052b57_A_U20_A21AAAAA00750.25 AA00
062b57_A_A21_U22NANNANT00.70 OP04
072b57_A_U22_A23NANNANT00.69 ZZ1S
082b57_A_A23_A24NANNANT00.95 OP29
092b57_A_A24_U25OPNOP01890.23 OP01
102b57_A_U25_C26AAAAA00550.24 AA00
112b57_A_C26_G27AAAAA00200.35 AA00
122b57_A_G27_C28AAAAA00720.36 AA00
132b57_A_C28_G29AAAAA00250.35 AA00
142b57_A_G29_U30AAAAA08870.13 AA08
152b57_A_U30_G31AAAAA08860.20 AA08
162b57_A_G31_G32AAAAA00640.26 AA00
172b57_A_G32_A33AAAAA00720.27 AA00
182b57_A_A33_U34A-BAB05510.25 AB05
192b57_A_U34_A35NANNANT00.91 OP22
202b57_A_A35_U36NANNANT00.54 OP21
212b57_A_U36_G37OPNOP11220.43 OP11
222b57_A_G37_G38AAAAA00560.21 AA00
232b57_A_G38_C39OPNOP01320.34 OP01
242b57_A_C39_A40AAAAA00450.30 AA00
252b57_A_A40_C41AAAAA00850.12 AA00
262b57_A_C41_G42AAAAA00890.20 AA00
272b57_A_G42_C43AAAAA00700.28 AA00
282b57_A_C43_A44AAAAA00880.19 AA00
292b57_A_A44_A45AAAAA00750.23 AA00
302b57_A_A45_G46AAAAA00670.26 AA00
312b57_A_G46_U47A-BAB04650.30 AB04
322b57_A_U47_U48NANNANT01.04 OP17
332b57_A_U48_U49NANNANT01.25 IC02
342b57_A_U49_C50NANNANT00.72 OP15
352b57_A_C50_U51AAAAA00310.49 AA00
362b57_A_U51_A52AAAAA00760.28 AA00
372b57_A_A52_C53AAAAA08430.28 AA08
382b57_A_C53_C54OPNOP01240.56 OP01
392b57_A_C54_G55AAAAA00680.26 AA00
402b57_A_G55_G56AAAAA00940.09 AA00
412b57_A_G56_G57AAAAA00880.17 AA00
422b57_A_G57_C58AAAAA00690.27 AA00
432b57_A_C58_A59AAAAA00900.20 AA00
442b57_A_A59_C60AAAAA00480.35 AA00
452b57_A_C60_C61AAAAA08850.21 AA08
462b57_A_C61_G62NANNANT00.61 IC04
472b57_A_G62_U63NANNANT00.64 OP10
482b57_A_U63_A64NANNANT01.63 BB14
492b57_A_A64_A65A-BAB01140.35 AB01
502b57_A_A65_A66B-ABA13570.34 BA13
512b57_A_A66_U67NANNANT00.69 AA10
522b57_A_U67_G68AAAAA00680.19 AA00
532b57_A_G68_U69AAAAA00810.18 AA00
542b57_A_U69_C70AAAAA00890.16 AA00
552b57_A_C70_C71AAAAA00860.15 AA00
562b57_A_C71_G72AAAAA00960.16 AA00
572b57_A_G72_A73NANNANT00.48 IC04
582b57_A_A73_U74AAAAA00630.27 AA00
592b57_A_U74_U75AAAAA00870.21 AA00
602b57_A_U75_A76AAAAA00880.15 AA00
612b57_A_A76_U77AAAAA00800.25 AA00
622b57_A_U77_G78AAAAA00870.14 AA00
632b57_A_G78_U79AAAAA00810.19 AA00
642b57_A_U79_C80AAwAA06710.21 AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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