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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012b3j_E_U28_U29AAwAA01540.24 AA01
022b3j_E_U29_G30AAwAA01720.35 AA01
032b3j_E_G30_A31AAAAA00820.19 AA00
042b3j_E_A31_C32AAAAA00690.28 AA00
052b3j_E_C32_U33NANNANT00.58 OP29
062b3j_E_U33_P5P34NANNANT01.97 OP19
072b3j_E_P5P34_C35NANNANT00.77 OP06
082b3j_E_C35_G36NANNANT02.02 BB2S
092b3j_E_G36_G37NANNANT00.70 OP21
102b3j_E_G37_A38OPNOP12330.66 OP12
112b3j_E_A38_U39AAAAA00550.40 AA00
122b3j_E_U39_C40AAAAA00920.22 AA00
132b3j_E_C40_A41AAAAA00890.14 AA00
142b3j_E_A41_A42AAwAA06820.18 AA06
152b3j_F_U28_U29AAAAA00550.41 AA00
162b3j_F_U29_G30AAwAA01620.25 AA01
172b3j_F_G30_A31AAAAA00760.12 AA00
182b3j_F_A31_C32AAAAA00820.24 AA00
192b3j_F_C32_U33NANNANT00.59 OP29
202b3j_F_U33_P5P34NANNANT01.95 OP19
212b3j_F_P5P34_C35NANNANT00.81 OP06
222b3j_F_C35_G36NANNANT00.90 BB20
232b3j_F_G36_G37NANNANT00.72 OP21
242b3j_F_G37_A38NANNANT01.83 OP01
252b3j_F_A38_U39AAAAA00660.36 AA00
262b3j_F_U39_C40AAAAA00940.20 AA00
272b3j_F_C40_A41AAAAA00770.18 AA00
282b3j_F_A41_A42AAwAA06600.24 AA06
292b3j_G_G30_A31AAAAA00680.21 AA00
302b3j_G_A31_C32AAAAA00880.18 AA00
312b3j_G_C32_U33NANNANT00.74 OP29
322b3j_G_U33_P5P34NANNANT01.89 OP19
332b3j_G_P5P34_C35NANNANT00.90 OP06
342b3j_G_C35_G36NANNANT01.94 BB2S
352b3j_G_G36_G37NANNANT00.86 ZZ02
362b3j_H_U27_U28NANNANT00.54 AAS1
372b3j_H_U28_U29AAAAA00880.15 AA00
382b3j_H_U29_G30AAAAA00900.22 AA00
392b3j_H_G30_A31AAwAA01470.29 AA01
402b3j_H_A31_C32AAAAA08790.33 AA08
412b3j_H_C32_U33NANNANT00.55 OP29
422b3j_H_U33_P5P34NANNANT01.74 OP27
432b3j_H_P5P34_C35NANNANT02.32 OP21
442b3j_H_C35_G36NANNANT01.97 BB2S
452b3j_H_G36_G37NANNANT00.71 OP21
462b3j_H_G37_A38OPNOP12280.69 OP12
472b3j_H_A38_U39AAAAA00540.41 AA00
482b3j_H_U39_C40AAAAA00940.14 AA00
492b3j_H_C40_A41AAAAA00910.14 AA00
502b3j_H_A41_A42AAAAA00810.15 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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