Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsid
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2b2g_R_A302_U303 | AAw | AA06 | 65 | 0.21 |
| 02 | 2b2g_R_U303_G304 | AAA | AA08 | 65 | 0.27 |
| 03 | 2b2g_R_G304_A305 | NAN | NANT | 0 | 1.07 |
| 04 | 2b2g_R_A305_G306 | NAN | NANT | 0 | 0.85 |
| 05 | 2b2g_R_G306_G307 | NAN | NANT | 0 | 0.39 |
| 06 | 2b2g_R_G307_A308 | AAw | AA01 | 32 | 0.37 |
| 07 | 2b2g_R_A308_U309 | NAN | NANT | 0 | 0.45 |
| 08 | 2b2g_R_U309_U310 | NAN | NANT | 0 | 2.26 |
| 09 | 2b2g_R_U310_A311 | NAN | NANT | 0 | 1.34 |
| 10 | 2b2g_R_A311_C312 | NAN | NANT | 0 | 0.67 |
| 11 | 2b2g_R_C312_C313 | AAA | AA00 | 74 | 0.25 |
| 12 | 2b2g_R_C313_C314 | AAA | AA00 | 46 | 0.34 |
| 13 | 2b2g_R_C314_A315 | AAA | AA00 | 93 | 0.12 |
| 14 | 2b2g_R_A315_U316 | AAA | AA00 | 50 | 0.25 |
| 15 | 2b2g_R_U316_G317 | NAN | NANT | 0 | 0.71 |
| 16 | 2b2g_S_A402_U403 | NAN | NANT | 0 | 0.41 |
| 17 | 2b2g_S_U403_G404 | NAN | NANT | 0 | 0.42 |
| 18 | 2b2g_S_G404_A405 | NAN | NANT | 0 | 0.72 |
| 19 | 2b2g_S_A405_G406 | NAN | NANT | 0 | 0.68 |
| 20 | 2b2g_S_G406_G407 | AAA | AA00 | 28 | 0.33 |
| 21 | 2b2g_S_G407_A408 | AAA | AA00 | 28 | 0.25 |
| 22 | 2b2g_S_A408_U409 | NAN | NANT | 0 | 2.15 |
| 23 | 2b2g_S_U409_U410 | NAN | NANT | 0 | 2.21 |
| 24 | 2b2g_S_U410_A411 | NAN | NANT | 0 | 2.60 |
| 25 | 2b2g_S_A411_C412 | NAN | NANT | 0 | 0.52 |
| 26 | 2b2g_S_C412_C413 | AAA | AA04 | 28 | 0.33 |
| 27 | 2b2g_S_C413_C414 | NAN | NANT | 0 | 0.51 |
| 28 | 2b2g_S_C414_A415 | NAN | NANT | 0 | 0.37 |
| 29 | 2b2g_S_A415_U416 | AAA | AA03 | 32 | 0.34 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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