Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsid
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2b2e_R_A302_U303 | NAN | NANT | 0 | 0.50 |
| 02 | 2b2e_R_U303_G304 | AAA | AA08 | 74 | 0.18 |
| 03 | 2b2e_R_G304_A305 | NAN | NANT | 0 | 0.45 |
| 04 | 2b2e_R_A305_G306 | NAN | NANT | 0 | 2.13 |
| 05 | 2b2e_R_G306_G307 | AAA | AA00 | 86 | 0.20 |
| 06 | 2b2e_R_G307_A308 | AAA | AA00 | 89 | 0.20 |
| 07 | 2b2e_R_A308_U309 | NAN | NANT | 0 | 0.66 |
| 08 | 2b2e_R_U309_U310 | NAN | NANT | 0 | 0.58 |
| 09 | 2b2e_R_U310_A311 | NAN | NANT | 0 | 1.18 |
| 10 | 2b2e_R_A311_C312 | NAN | NANT | 0 | 0.57 |
| 11 | 2b2e_R_C312_C313 | AAA | AA04 | 81 | 0.26 |
| 12 | 2b2e_R_C313_C314 | AAA | AA00 | 69 | 0.32 |
| 13 | 2b2e_R_C314_A315 | AAA | AA00 | 98 | 0.17 |
| 14 | 2b2e_R_A315_U316 | AAA | AA00 | 73 | 0.33 |
| 15 | 2b2e_R_U316_G317 | AAA | AA00 | 49 | 0.23 |
| 16 | 2b2e_S_U403_G404 | AAA | AA00 | 67 | 0.34 |
| 17 | 2b2e_S_G404_A405 | NAN | NANT | 0 | 0.98 |
| 18 | 2b2e_S_A405_G406 | NAN | NANT | 0 | 0.81 |
| 19 | 2b2e_S_G406_G407 | AAA | AA08 | 33 | 0.28 |
| 20 | 2b2e_S_G407_A408 | AAA | AA00 | 67 | 0.24 |
| 21 | 2b2e_S_A408_U409 | OPN | OP04 | 19 | 0.47 |
| 22 | 2b2e_S_U409_U410 | NAN | NANT | 0 | 1.74 |
| 23 | 2b2e_S_U410_A411 | NAN | NANT | 0 | 1.94 |
| 24 | 2b2e_S_A411_C412 | NAN | NANT | 0 | 1.64 |
| 25 | 2b2e_S_C412_C413 | NAN | NANT | 0 | 0.35 |
| 26 | 2b2e_S_C413_C414 | AAA | AA04 | 29 | 0.58 |
| 27 | 2b2e_S_C414_A415 | AAA | AA00 | 12 | 0.42 |
| 28 | 2b2e_S_A415_U416 | AAA | AA04 | 69 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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