DNATCO v4.1: results

Charged and uncharged tRNAs adopt distinct conformations when complexed with human tryptophanyl-tRNA synthetase

Results of the assignment of 142 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2azx_C_G501_A502	AAA	AA00	37	0.23	AA00
002	2azx_C_A502_C503	AAA	AA00	67	0.17	AA00
003	2azx_C_C503_C504	AAA	AA00	68	0.19	AA00
004	2azx_C_C504_U505	AAA	AA00	90	0.17	AA00
005	2azx_C_U505_C506	AAA	AA08	72	0.28	AA08
006	2azx_C_C506_G507	AAA	AA00	78	0.24	AA00
007	2azx_C_G507_U508	NAN	NANT	0	1.69	OP16
008	2azx_C_U508_G509	NAN	NANT	0	0.55	IC07
009	2azx_C_G509_G510	NAN	NANT	0	1.38	OP07
010	2azx_C_G510_C511	AAA	AA00	56	0.29	AA00
011	2azx_C_C511_G512	AAA	AA00	85	0.18	AA00
012	2azx_C_G512_C513	AAw	AA01	85	0.28	AA01
013	2azx_C_C513_A514	AAA	AA00	44	0.41	AA00
014	2azx_C_A514_A515	AAA	AA00	70	0.21	AA00
015	2azx_C_A515_U516	NAN	NANT	0	1.21	IC03
016	2azx_C_U516_G518	NAN	NANT	0	1.63	IC03
017	2azx_C_G518_G519	NAN	NANT	0	1.37	AB02
018	2azx_C_G519_U520	NAN	NANT	0	1.24	AA13
019	2azx_C_U520_A521	NAN	NANT	0	1.21	OP06
020	2azx_C_A521_G522	NAN	NANT	0	1.13	AA11
021	2azx_C_G522_C523	AAA	AA00	83	0.23	AA00
022	2azx_C_C523_G524	AAA	AA00	87	0.12	AA00
023	2azx_C_G524_C525	AAA	AA00	89	0.17	AA00
024	2azx_C_C525_G526	AAA	AA00	41	0.46	AA00
025	2azx_C_G526_U527	AAA	AA00	83	0.20	AA00
026	2azx_C_U527_C528	AAA	AA00	77	0.21	AA00
027	2azx_C_C528_U529	AAA	AA00	62	0.31	AA00
028	2azx_C_U529_G530	AAA	AA00	85	0.16	AA00
029	2azx_C_G530_A531	AAA	AA00	66	0.25	AA00
030	2azx_C_A531_C532	AAA	AA00	38	0.39	AA00
031	2azx_C_C532_U533	AAw	AA01	66	0.28	AA01
032	2azx_C_U533_C534	OPN	OP04	14	0.55	OP04
033	2azx_C_C534_C535	AAw	AA01	64	0.36	AA01
034	2azx_C_C535_A536	AAA	AA08	83	0.30	AA08
035	2azx_C_A536_G537	AAA	AA08	66	0.33	AA08
036	2azx_C_G537_A538	AAA	AA00	56	0.32	AA00
037	2azx_C_A538_U539	AAA	AA08	78	0.24	AA08
038	2azx_C_U539_C540	AAw	AA01	83	0.24	AA01
039	2azx_C_C540_A541	AAA	AA08	77	0.29	AA08
040	2azx_C_A541_G542	AAA	AA00	73	0.16	AA00
041	2azx_C_G542_A543	AAA	AA00	51	0.27	AA00
042	2azx_C_A543_A544	AAA	AA00	89	0.15	AA00
043	2azx_C_A544_G545	AAA	AA00	61	0.30	AA00
044	2azx_C_G545_G546	NAN	NANT	0	0.89	AA03
045	2azx_C_G546_U547	NAN	NANT	0	1.43	OP11
046	2azx_C_U547_U548	NAN	NANT	0	0.64	OP01
047	2azx_C_U548_G549	NAN	NANT	0	1.72	OP06
048	2azx_C_G549_C550	AAA	AA00	82	0.26	AA00
049	2azx_C_C550_G551	AAA	AA00	77	0.17	AA00
050	2azx_C_G551_U552	AAw	AA10	43	0.26	AA10
051	2azx_C_U552_G553	AAA	AA00	68	0.34	AA00
052	2azx_C_G553_U554	AAA	AA00	70	0.21	AA00
053	2azx_C_U554_U555	AAA	AA00	62	0.37	AA00
054	2azx_C_U555_C556	OPN	OP03	75	0.35	OP03
055	2azx_C_C556_G557	AAA	AA00	69	0.33	AA00
056	2azx_C_G557_A558	NAN	NANT	0	0.75	AB04
057	2azx_C_A558_A559	NAN	NANT	0	0.41	OP04
058	2azx_C_A559_U560	AAA	AA08	50	0.46	AA08
059	2azx_C_U560_C561	NAN	NANT	0	1.92	ZZ02
060	2azx_C_C561_A562	AAA	AA00	94	0.09	AA00
061	2azx_C_A562_C563	AAA	AA00	80	0.19	AA00
062	2azx_C_C563_G564	AAA	AA08	68	0.23	AA08
063	2azx_C_G564_U565	AAA	AA08	80	0.20	AA08
064	2azx_C_U565_C566	AAA	AA00	79	0.20	AA00
065	2azx_C_C566_G567	AAA	AA00	77	0.12	AA00
066	2azx_C_G567_G568	AAA	AA00	62	0.27	AA00
067	2azx_C_G568_G569	AAA	AA00	85	0.20	AA00
068	2azx_C_G569_G570	AAA	AA00	88	0.21	AA00
069	2azx_C_G570_U571	AAA	AA00	87	0.18	AA00
070	2azx_C_U571_C572	AAA	AA00	72	0.23	AA00
071	2azx_C_C572_A573	NAN	NANT	0	0.54	AA09
072	2azx_D_G501_A502	NAN	NANT	0	1.80	OP31
073	2azx_D_A502_C503	NAN	NANT	0	0.66	AA01
074	2azx_D_C503_C504	NAN	NANT	0	0.58	AA06
075	2azx_D_C504_U505	NAN	NANT	0	0.83	AA11
076	2azx_D_U505_C506	AAA	AA00	54	0.36	AA00
077	2azx_D_C506_G507	AAA	AA00	87	0.26	AA00
078	2azx_D_G507_U508	NAN	NANT	0	1.54	OP01
079	2azx_D_U508_G509	NAN	NANT	0	0.69	IC07
080	2azx_D_G509_G510	NAN	NANT	0	1.63	OP05
081	2azx_D_G510_C511	AAA	AA00	15	0.34	AA00
082	2azx_D_C511_G512	AAA	AA00	61	0.20	AA00
083	2azx_D_G512_C513	AAw	AA01	91	0.15	AA01
084	2azx_D_C513_A514	AAw	AA01	40	0.35	AA01
085	2azx_D_A514_A515	AAA	AA08	78	0.34	AA08
086	2azx_D_A515_U516	NAN	NANT	0	1.13	OP04
087	2azx_D_U516_G518	NAN	NANT	0	1.39	OP17
088	2azx_D_G518_G519	NAN	NANT	0	1.07	AA07
089	2azx_D_G519_U520	NAN	NANT	0	1.29	BA16
090	2azx_D_U520_A521	NAN	NANT	0	0.68	OP06
091	2azx_D_A521_G522	NAN	NANT	0	0.93	AA11
092	2azx_D_G522_C523	AAA	AA00	67	0.19	AA00
093	2azx_D_C523_G524	AAA	AA00	78	0.15	AA00
094	2azx_D_G524_C525	AAA	AA00	78	0.15	AA00
095	2azx_D_C525_G526	AAA	AA00	83	0.28	AA00
096	2azx_D_G526_U527	AAA	AA00	73	0.26	AA00
097	2azx_D_U527_C528	AAA	AA00	93	0.14	AA00
098	2azx_D_C528_U529	AAA	AA00	91	0.11	AA00
099	2azx_D_U529_G530	AAA	AA00	92	0.18	AA00
100	2azx_D_G530_A531	AAA	AA00	88	0.15	AA00
101	2azx_D_A531_C532	AAA	AA00	77	0.30	AA00
102	2azx_D_C532_U533	AAA	AA00	71	0.36	AA00
103	2azx_D_U533_C534	OPN	OP04	71	0.33	OP04
104	2azx_D_C534_C535	AAA	AA00	66	0.42	AA00
105	2azx_D_C535_A536	AAA	AA04	84	0.27	AA04
106	2azx_D_A536_G537	AAA	AA00	31	0.37	AA00
107	2azx_D_G537_A538	AAA	AA08	85	0.29	AA08
108	2azx_D_A538_U539	AAA	AA00	57	0.39	AA00
109	2azx_D_U539_C540	AAw	AA01	81	0.25	AA01
110	2azx_D_C540_A541	AAA	AA08	90	0.25	AA08
111	2azx_D_A541_G542	AAA	AA00	86	0.07	AA00
112	2azx_D_G542_A543	AAA	AA08	92	0.22	AA08
113	2azx_D_A543_A544	AAA	AA00	57	0.23	AA00
114	2azx_D_A544_G545	AAA	AA08	63	0.36	AA08
115	2azx_D_G545_G546	NAN	NANT	0	0.47	IC02
116	2azx_D_G546_U547	NAN	NANT	0	1.38	OP17
117	2azx_D_U547_U548	NAN	NANT	0	1.71	OP06
118	2azx_D_U548_G549	NAN	NANT	0	1.41	OP06
119	2azx_D_G549_C550	AAA	AA00	45	0.29	AA00
120	2azx_D_C550_G551	AAA	AA00	17	0.28	AA00
121	2azx_D_G551_U552	AAw	AA06	86	0.20	AA06
122	2azx_D_U552_G553	AAA	AA04	33	0.52	AA04
123	2azx_D_G553_U554	AAA	AA00	86	0.16	AA00
124	2azx_D_U554_U555	AAA	AA08	68	0.20	AA08
125	2azx_D_U555_C556	OPN	OP04	85	0.16	OP04
126	2azx_D_C556_G557	AAA	AA00	61	0.31	AA00
127	2azx_D_G557_A558	NAN	NANT	0	0.91	AA03
128	2azx_D_A558_A559	NAN	NANT	0	1.41	OP18
129	2azx_D_A559_U560	NAN	NANT	0	0.76	AA08
130	2azx_D_U560_C561	NAN	NANT	0	1.66	OP01
131	2azx_D_C561_A562	AAA	AA00	83	0.18	AA00
132	2azx_D_A562_C563	AAA	AA00	85	0.15	AA00
133	2azx_D_C563_G564	AAw	AA01	71	0.20	AA01
134	2azx_D_G564_U565	AAA	AA00	22	0.45	AA00
135	2azx_D_U565_C566	AAw	AA11	46	0.36	AA11
136	2azx_D_C566_G567	AAA	AA00	55	0.44	AA00
137	2azx_D_G567_G568	AAu	AA12	76	0.32	AA12
138	2azx_D_G568_G569	AAA	AA00	70	0.25	AA00
139	2azx_D_G569_G570	AAA	AA08	65	0.23	AA08
140	2azx_D_G570_U571	NAN	NANT	0	0.70	OP04
141	2azx_D_U571_C572	NAN	NANT	0	0.84	OP30
142	2azx_D_C572_A573	NAN	NANT	0	1.12	IC02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 142 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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