Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure (II) of Nova-1 KH1/KH2 domain tandem with 25nt RNA hairpin
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2anr_B_C201_5BU202 | AAA | AA04 | 59 | 0.34 |
| 02 | 2anr_B_5BU202_C203 | AAA | AA00 | 88 | 0.18 |
| 03 | 2anr_B_C203_G204 | AAA | AA00 | 75 | 0.14 |
| 04 | 2anr_B_G204_C205 | AAA | AA00 | 86 | 0.14 |
| 05 | 2anr_B_C205_G206 | AAA | AA00 | 22 | 0.52 |
| 06 | 2anr_B_G206_G207 | A-B | AB05 | 76 | 0.31 |
| 07 | 2anr_B_G207_A208 | OPN | OP10 | 71 | 0.28 |
| 08 | 2anr_B_A208_U209 | AAA | AA08 | 77 | 0.35 |
| 09 | 2anr_B_U209_C210 | AAA | AA08 | 78 | 0.26 |
| 10 | 2anr_B_C210_A211 | AAA | AA08 | 36 | 0.46 |
| 11 | 2anr_B_A211_G212 | NAN | NANT | 0 | 0.54 |
| 12 | 2anr_B_G212_U213 | NAN | NANT | 0 | 1.01 |
| 13 | 2anr_B_U213_C214 | OPN | OP20 | 32 | 0.79 |
| 14 | 2anr_B_C214_A215 | NAN | NANT | 0 | 0.46 |
| 15 | 2anr_B_A215_C216 | AAA | AA00 | 83 | 0.27 |
| 16 | 2anr_B_C216_C217 | AAA | AA00 | 38 | 0.44 |
| 17 | 2anr_B_C217_C218 | AAA | AA00 | 59 | 0.35 |
| 18 | 2anr_B_C218_A219 | AAu | AA12 | 50 | 0.51 |
| 19 | 2anr_B_A219_A220 | AAA | AA00 | 67 | 0.27 |
| 20 | 2anr_B_A220_G221 | AAA | AA08 | 38 | 0.47 |
| 21 | 2anr_B_G221_C222 | AAA | AA00 | 78 | 0.23 |
| 22 | 2anr_B_C222_G223 | AAA | AA00 | 83 | 0.19 |
| 23 | 2anr_B_G223_A224 | AAA | AA00 | 89 | 0.12 |
| 24 | 2anr_B_A224_G225 | AAA | AA00 | 94 | 0.12 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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