Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2agq_B_DG1_DG2 | BBB | BB00 | 85 | 0.18 |
| 02 | 2agq_B_DG2_DC3 | B12 | BB04 | 69 | 0.18 |
| 03 | 2agq_B_DC3_DT4 | BBB | BB00 | 87 | 0.24 |
| 04 | 2agq_B_DT4_DA5 | BBB | BB00 | 89 | 0.32 |
| 05 | 2agq_B_DA5_DC6 | BBB | BB00 | 90 | 0.14 |
| 06 | 2agq_B_DC6_DA7 | BBB | BB00 | 89 | 0.23 |
| 07 | 2agq_B_DA7_DG8 | B12 | BB04 | 78 | 0.20 |
| 08 | 2agq_B_DG8_DG9 | BBB | BB00 | 80 | 0.26 |
| 09 | 2agq_B_DG9_DA10 | BBB | BB00 | 71 | 0.16 |
| 10 | 2agq_B_DA10_DC11 | BBB | BB00 | 64 | 0.25 |
| 11 | 2agq_B_DC11_DT12 | BBB | BB00 | 83 | 0.20 |
| 12 | 2agq_C_DT1_DC2 | NAN | NANT | 0 | 1.07 |
| 13 | 2agq_C_DC2_DA3 | BBB | BB00 | 36 | 0.61 |
| 14 | 2agq_C_DA3_DT4 | NAN | NANT | 0 | 0.55 |
| 15 | 2agq_C_DT4_DG5 | BBB | BB00 | 62 | 0.35 |
| 16 | 2agq_C_DG5_DA6 | BBB | BB00 | 74 | 0.30 |
| 17 | 2agq_C_DA6_DG7 | BBB | BB00 | 76 | 0.18 |
| 18 | 2agq_C_DG7_DT8 | BBB | BB00 | 68 | 0.34 |
| 19 | 2agq_C_DT8_DC9 | BBB | BB00 | 82 | 0.18 |
| 20 | 2agq_C_DC9_DC10 | BBB | BB00 | 90 | 0.17 |
| 21 | 2agq_C_DC10_DT11 | BBB | BB00 | 92 | 0.16 |
| 22 | 2agq_C_DT11_DG12 | B12 | BB04 | 94 | 0.18 |
| 23 | 2agq_C_DG12_DT13 | BBB | BB00 | 96 | 0.12 |
| 24 | 2agq_C_DT13_DA14 | BBB | BB00 | 91 | 0.14 |
| 25 | 2agq_C_DA14_DG15 | B12 | BB04 | 81 | 0.21 |
| 26 | 2agq_C_DG15_DC16 | BBB | BB00 | 87 | 0.18 |
| 27 | 2agq_C_DC16_DC17 | BBB | BB00 | 19 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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