Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2agp_C_DG1801_DG1802 | BBB | BB00 | 91 | 0.18 |
| 02 | 2agp_C_DG1802_DG1803 | BB2 | BB07 | 65 | 0.33 |
| 03 | 2agp_C_DG1803_DG1804 | BBB | BB00 | 84 | 0.26 |
| 04 | 2agp_C_DG1804_DG1805 | B12 | BB04 | 88 | 0.18 |
| 05 | 2agp_C_DG1805_DA1806 | BBB | BB00 | 33 | 0.45 |
| 06 | 2agp_C_DA1806_DA1807 | BBB | BB00 | 69 | 0.24 |
| 07 | 2agp_C_DA1807_DG1808 | BBB | BB00 | 72 | 0.32 |
| 08 | 2agp_C_DG1808_DG1809 | BBB | BB00 | 51 | 0.37 |
| 09 | 2agp_C_DG1809_DA1810 | BBB | BB00 | 84 | 0.23 |
| 10 | 2agp_C_DA1810_DT1811 | BBB | BB00 | 93 | 0.24 |
| 11 | 2agp_C_DT1811_DT1812 | miB | BB10 | 60 | 0.31 |
| 12 | 2agp_D_DT1902_DT1903 | NAN | NANT | 0 | 1.34 |
| 13 | 2agp_D_DT1903_DT1904 | NAN | NANT | 0 | 1.07 |
| 14 | 2agp_D_DT1904_DT1905 | NAN | NANT | 0 | 1.20 |
| 15 | 2agp_D_DT1905_DG1906 | NAN | NANT | 0 | 0.54 |
| 16 | 2agp_D_DG1906_DA1907 | B12 | BB04 | 79 | 0.21 |
| 17 | 2agp_D_DA1907_DA1908 | B12 | BB04 | 60 | 0.35 |
| 18 | 2agp_D_DA1908_DT1909 | miB | BB10 | 43 | 0.52 |
| 19 | 2agp_D_DT1909_DC1910 | B12 | BB04 | 31 | 0.39 |
| 20 | 2agp_D_DC1910_DC1911 | NAN | NANT | 0 | 0.54 |
| 21 | 2agp_D_DC1911_DT1912 | BBB | BB01 | 14 | 0.39 |
| 22 | 2agp_D_DT1912_DT1913 | BBB | BB00 | 51 | 0.36 |
| 23 | 2agp_D_DT1913_DC1914 | BBB | BB00 | 68 | 0.27 |
| 24 | 2agp_D_DC1914_DC1915 | BBB | BB00 | 57 | 0.31 |
| 25 | 2agp_D_DC1915_DC1916 | BBB | BB00 | 83 | 0.26 |
| 26 | 2agp_D_DC1916_DC1917 | BBB | BB00 | 88 | 0.21 |
| 27 | 2agp_D_DC1917_DC1918 | B12 | BB04 | 63 | 0.25 |
| 28 | 2agp_E_DG1801_DG1802 | BBB | BB00 | 91 | 0.19 |
| 29 | 2agp_E_DG1802_DG1803 | BB2 | BB07 | 57 | 0.18 |
| 30 | 2agp_E_DG1803_DG1804 | BBB | BB00 | 56 | 0.23 |
| 31 | 2agp_E_DG1804_DG1805 | miB | BB10 | 86 | 0.29 |
| 32 | 2agp_E_DG1805_DA1806 | NAN | NANT | 0 | 0.38 |
| 33 | 2agp_E_DA1806_DA1807 | NAN | NANT | 0 | 0.34 |
| 34 | 2agp_E_DA1807_DG1808 | BBB | BB00 | 70 | 0.28 |
| 35 | 2agp_E_DG1808_DG1809 | BBB | BB00 | 36 | 0.37 |
| 36 | 2agp_E_DG1809_DA1810 | NAN | NANT | 0 | 0.56 |
| 37 | 2agp_E_DA1810_DT1811 | BBB | BB00 | 69 | 0.33 |
| 38 | 2agp_E_DT1811_DT1812 | BBB | BB00 | 70 | 0.25 |
| 39 | 2agp_F_DT1902_DT1903 | NAN | NANT | 0 | 1.87 |
| 40 | 2agp_F_DT1903_DT1904 | NAN | NANT | 0 | 1.48 |
| 41 | 2agp_F_DT1904_DT1905 | NAN | NANT | 0 | 1.50 |
| 42 | 2agp_F_DT1905_DG1906 | BBB | BB00 | 21 | 0.70 |
| 43 | 2agp_F_DG1906_DA1907 | miB | BB10 | 81 | 0.34 |
| 44 | 2agp_F_DA1907_DA1908 | BBB | BB00 | 44 | 0.32 |
| 45 | 2agp_F_DA1908_DT1909 | BBB | BB00 | 59 | 0.36 |
| 46 | 2agp_F_DT1909_DC1910 | BBB | BB00 | 65 | 0.32 |
| 47 | 2agp_F_DC1910_DC1911 | miB | BB13 | 52 | 0.31 |
| 48 | 2agp_F_DC1911_DT1912 | BBB | BB00 | 19 | 0.37 |
| 49 | 2agp_F_DT1912_DT1913 | B12 | BB04 | 56 | 0.13 |
| 50 | 2agp_F_DT1913_DC1914 | BBB | BB00 | 15 | 0.39 |
| 51 | 2agp_F_DC1914_DC1915 | BBB | BB00 | 64 | 0.21 |
| 52 | 2agp_F_DC1915_DC1916 | BBB | BB00 | 83 | 0.28 |
| 53 | 2agp_F_DC1916_DC1917 | BBB | BB00 | 63 | 0.36 |
| 54 | 2agp_F_DC1917_DC1918 | NAN | NANT | 0 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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