Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ago_B_DG1801_DG1802 | BBB | BB00 | 81 | 0.22 |
| 02 | 2ago_B_DG1802_DG1803 | BB2 | BB07 | 69 | 0.35 |
| 03 | 2ago_B_DG1803_DG1804 | BBB | BB00 | 76 | 0.38 |
| 04 | 2ago_B_DG1804_DG1805 | B12 | BB04 | 75 | 0.20 |
| 05 | 2ago_B_DG1805_DA1806 | BB2 | BB07 | 48 | 0.32 |
| 06 | 2ago_B_DA1806_DA1807 | B12 | BB04 | 37 | 0.30 |
| 07 | 2ago_B_DA1807_DG1808 | BBB | BB00 | 69 | 0.33 |
| 08 | 2ago_B_DG1808_DG1809 | BB2 | BB07 | 47 | 0.25 |
| 09 | 2ago_B_DG1809_DA1810 | BBB | BB00 | 84 | 0.18 |
| 10 | 2ago_B_DA1810_DT1811 | BBB | BB00 | 84 | 0.17 |
| 11 | 2ago_B_DT1811_DT1812 | BBB | BB00 | 74 | 0.27 |
| 12 | 2ago_B_DT1812_DC1813 | BBB | BB00 | 89 | 0.19 |
| 13 | 2ago_B_DC1813_DG1814 | B12 | BB05 | 25 | 0.45 |
| 14 | 2ago_C_DT1902_DT1903 | NAN | NANT | 0 | 1.36 |
| 15 | 2ago_C_DT1903_DT1904 | NAN | NANT | 0 | 0.87 |
| 16 | 2ago_C_DT1904_DT1905 | NAN | NANT | 0 | 0.75 |
| 17 | 2ago_C_DT1905_DG1906 | BBB | BB00 | 14 | 0.50 |
| 18 | 2ago_C_DG1906_DA1907 | BBB | BB00 | 71 | 0.39 |
| 19 | 2ago_C_DA1907_DA1908 | BBB | BB00 | 86 | 0.17 |
| 20 | 2ago_C_DA1908_DT1909 | BBB | BB00 | 12 | 0.39 |
| 21 | 2ago_C_DT1909_DC1910 | NAN | NANT | 0 | 0.48 |
| 22 | 2ago_C_DC1910_DC1911 | BBB | BB00 | 77 | 0.21 |
| 23 | 2ago_C_DC1911_DT1912 | BBB | BB01 | 56 | 0.23 |
| 24 | 2ago_C_DT1912_DT1913 | BBB | BB00 | 22 | 0.43 |
| 25 | 2ago_C_DT1913_DC1914 | BBB | BB00 | 73 | 0.22 |
| 26 | 2ago_C_DC1914_DC1915 | BBB | BB00 | 82 | 0.18 |
| 27 | 2ago_C_DC1915_DC1916 | B12 | BB04 | 76 | 0.13 |
| 28 | 2ago_C_DC1916_DC1917 | BBB | BB00 | 92 | 0.14 |
| 29 | 2ago_C_DC1917_DC1918 | BBB | BB00 | 64 | 0.36 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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