Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural Basis of DNA Recognition by p53 Tetramers (complex I)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ac0_E_DC1_DG2 | BBw | BB16 | 86 | 0.22 |
| 02 | 2ac0_E_DG2_DG3 | BB2 | BB07 | 36 | 0.45 |
| 03 | 2ac0_E_DG3_DG4 | BBB | BB00 | 65 | 0.30 |
| 04 | 2ac0_E_DG4_DC5 | NAN | NANT | 0 | 0.65 |
| 05 | 2ac0_E_DC5_DA6 | B12 | BB04 | 23 | 0.45 |
| 06 | 2ac0_E_DA6_DT7 | BBB | BB00 | 63 | 0.41 |
| 07 | 2ac0_E_DT7_DG8 | B-A | BA08 | 88 | 0.29 |
| 08 | 2ac0_E_DG8_DC9 | AAA | AA02 | 16 | 0.42 |
| 09 | 2ac0_E_DC9_DC10 | A-B | AB03 | 65 | 0.37 |
| 10 | 2ac0_E_DC10_DC11 | NAN | NANT | 0 | 0.77 |
| 11 | 2ac0_E_DC11_DG12 | NAN | NANT | 0 | 0.88 |
| 12 | 2ac0_F_DC1_DG2 | NAN | NANT | 0 | 0.70 |
| 13 | 2ac0_F_DG2_DG3 | BBB | BB00 | 91 | 0.12 |
| 14 | 2ac0_F_DG3_DG4 | BBB | BB01 | 83 | 0.18 |
| 15 | 2ac0_F_DG4_DC5 | NAN | NANT | 0 | 0.47 |
| 16 | 2ac0_F_DC5_DA6 | BBB | BB00 | 32 | 0.40 |
| 17 | 2ac0_F_DA6_DT7 | BBB | BB00 | 67 | 0.41 |
| 18 | 2ac0_F_DT7_DG8 | B12 | BB04 | 30 | 0.31 |
| 19 | 2ac0_F_DG8_DC9 | BBB | BB00 | 41 | 0.33 |
| 20 | 2ac0_F_DC9_DC10 | BB2 | BB07 | 53 | 0.38 |
| 21 | 2ac0_F_DC10_DC11 | BBB | BB00 | 59 | 0.43 |
| 22 | 2ac0_F_DC11_DG12 | B12 | BB04 | 83 | 0.26 |
| 23 | 2ac0_G_DC1_DG2 | BBw | BB16 | 68 | 0.37 |
| 24 | 2ac0_G_DG2_DG3 | BBB | BB00 | 65 | 0.23 |
| 25 | 2ac0_G_DG3_DG4 | BBB | BB01 | 76 | 0.21 |
| 26 | 2ac0_G_DG4_DC5 | BBB | BB01 | 23 | 0.30 |
| 27 | 2ac0_G_DC5_DA6 | BBB | BB00 | 66 | 0.31 |
| 28 | 2ac0_G_DA6_DT7 | BBB | BB00 | 64 | 0.41 |
| 29 | 2ac0_G_DT7_DG8 | B12 | BB04 | 76 | 0.25 |
| 30 | 2ac0_G_DG8_DC9 | BBB | BB00 | 84 | 0.26 |
| 31 | 2ac0_G_DC9_DC10 | B12 | BB04 | 62 | 0.30 |
| 32 | 2ac0_G_DC10_DC11 | B-A | BA01 | 50 | 0.26 |
| 33 | 2ac0_G_DC11_DG12 | AAA | AA00 | 58 | 0.30 |
| 34 | 2ac0_H_DC1_DG2 | A-B | AB05 | 15 | 0.40 |
| 35 | 2ac0_H_DG2_DG3 | BBB | BB00 | 66 | 0.24 |
| 36 | 2ac0_H_DG3_DG4 | B-A | BA05 | 82 | 0.30 |
| 37 | 2ac0_H_DG4_DC5 | BBB | BB00 | 25 | 0.26 |
| 38 | 2ac0_H_DC5_DA6 | B12 | BB04 | 69 | 0.28 |
| 39 | 2ac0_H_DA6_DT7 | BBB | BB00 | 49 | 0.48 |
| 40 | 2ac0_H_DT7_DG8 | B12 | BB04 | 63 | 0.30 |
| 41 | 2ac0_H_DG8_DC9 | BBB | BB01 | 79 | 0.19 |
| 42 | 2ac0_H_DC9_DC10 | BBB | BB00 | 39 | 0.30 |
| 43 | 2ac0_H_DC10_DC11 | BBB | BB00 | 50 | 0.26 |
| 44 | 2ac0_H_DC11_DG12 | BBB | BB00 | 35 | 0.43 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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