Conformers:
ABBIImiBZICOPNSYNN
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Dissecting the Roles of a Strictly Conserved Tyrosine in Substrate Recognition and Catalysis by Pseudouridine 55 Synthase
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ab4_B_C3_C4 | AAA | AA00 | 91 | 0.15 |
| 02 | 2ab4_B_C4_A5 | AAA | AA00 | 95 | 0.14 |
| 03 | 2ab4_B_A5_C6 | AAA | AA00 | 90 | 0.18 |
| 04 | 2ab4_B_C6_G7 | AAA | AA00 | 70 | 0.25 |
| 05 | 2ab4_B_G7_G8 | AAA | AA00 | 69 | 0.28 |
| 06 | 2ab4_B_G8_U9 | A-B | AB01 | 16 | 0.37 |
| 07 | 2ab4_B_C11_G12 | NAN | NANT | 0 | 0.47 |
| 08 | 2ab4_B_G12_A13 | NAN | NANT | 0 | 1.02 |
| 09 | 2ab4_B_A13_A14 | NAN | NANT | 0 | 0.79 |
| 10 | 2ab4_B_A14_U15 | NAN | NANT | 0 | 0.41 |
| 11 | 2ab4_B_U15_C16 | OPN | OP12 | 76 | 0.30 |
| 12 | 2ab4_B_C16_C17 | AAA | AA00 | 87 | 0.15 |
| 13 | 2ab4_B_C17_G18 | AAA | AA00 | 95 | 0.15 |
| 14 | 2ab4_B_G18_U19 | AAA | AA00 | 96 | 0.14 |
| 15 | 2ab4_B_U19_G20 | AAA | AA00 | 94 | 0.10 |
| 16 | 2ab4_B_G20_G21 | AAA | AA00 | 86 | 0.12 |
| 17 | 2ab4_B_G21_C22 | AAA | AA00 | 81 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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