DNATCO v4.1: results

TAR RNA recognition by a cyclic peptidomimetic of Tat protein

Results of the assignment of 270 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2a9x-m10_2_G4_G5	NAN	NANT	0	0.44	BA08
002	2a9x-m1_2_G4_G5	B-A	BA01	18	0.41	BA01
003	2a9x-m2_2_G4_G5	NAN	NANT	0	0.56	BA05
004	2a9x-m3_2_G4_G5	B-A	BA01	20	0.41	BA01
005	2a9x-m4_2_G4_G5	NAN	NANT	0	0.57	BA05
006	2a9x-m5_2_G4_G5	NAN	NANT	0	0.43	BA08
007	2a9x-m6_2_G4_G5	B-A	BA05	15	0.40	BA05
008	2a9x-m7_2_G4_G5	B-A	BA05	23	0.38	BA05
009	2a9x-m8_2_G4_G5	NAN	NANT	0	0.55	BA05
010	2a9x-m9_2_G4_G5	NAN	NANT	0	0.43	BA08
011	2a9x-m10_2_G5_C6	AAA	AA00	14	0.28	AA00
012	2a9x-m1_2_G5_C6	AAA	AA00	13	0.28	AA00
013	2a9x-m2_2_G5_C6	AAA	AA00	14	0.29	AA00
014	2a9x-m3_2_G5_C6	AAA	AA00	13	0.28	AA00
015	2a9x-m4_2_G5_C6	AAA	AA00	12	0.30	AA00
016	2a9x-m5_2_G5_C6	AAA	AA00	14	0.29	AA00
017	2a9x-m6_2_G5_C6	AAA	AA00	13	0.29	AA00
018	2a9x-m7_2_G5_C6	AAA	AA00	14	0.28	AA00
019	2a9x-m8_2_G5_C6	AAA	AA00	13	0.29	AA00
020	2a9x-m9_2_G5_C6	AAA	AA00	14	0.28	AA00
021	2a9x-m10_2_C6_U7	AAA	AA04	39	0.28	AA04
022	2a9x-m1_2_C6_U7	AAA	AA04	40	0.28	AA04
023	2a9x-m2_2_C6_U7	AAA	AA04	41	0.30	AA04
024	2a9x-m3_2_C6_U7	AAA	AA04	40	0.28	AA04
025	2a9x-m4_2_C6_U7	NAN	NANT	0	0.31	AA04
026	2a9x-m5_2_C6_U7	AAA	AA04	41	0.29	AA04
027	2a9x-m6_2_C6_U7	AAA	AA04	40	0.30	AA04
028	2a9x-m7_2_C6_U7	NAN	NANT	0	0.30	AA04
029	2a9x-m8_2_C6_U7	NAN	NANT	0	0.31	AA04
030	2a9x-m9_2_C6_U7	AAA	AA04	40	0.29	AA04
031	2a9x-m10_2_U7_C8	AAA	AA04	70	0.18	AA04
032	2a9x-m1_2_U7_C8	AAA	AA04	71	0.20	AA04
033	2a9x-m2_2_U7_C8	AAA	AA04	75	0.20	AA04
034	2a9x-m3_2_U7_C8	AAA	AA04	77	0.22	AA04
035	2a9x-m4_2_U7_C8	AAA	AA04	74	0.21	AA04
036	2a9x-m5_2_U7_C8	AAA	AA04	75	0.18	AA04
037	2a9x-m6_2_U7_C8	AAA	AA04	75	0.24	AA04
038	2a9x-m7_2_U7_C8	AAA	AA04	69	0.22	AA04
039	2a9x-m8_2_U7_C8	AAA	AA04	71	0.19	AA04
040	2a9x-m9_2_U7_C8	AAA	AA04	69	0.19	AA04
041	2a9x-m10_2_C8_G9	AAA	AA03	28	0.31	AA03
042	2a9x-m1_2_C8_G9	AAA	AA03	58	0.18	AA03
043	2a9x-m2_2_C8_G9	AAA	AA03	44	0.27	AA03
044	2a9x-m3_2_C8_G9	AAA	AA03	55	0.21	AA03
045	2a9x-m4_2_C8_G9	AAA	AA03	58	0.23	AA03
046	2a9x-m5_2_C8_G9	AAA	AA03	59	0.18	AA03
047	2a9x-m6_2_C8_G9	AAA	AA03	50	0.26	AA03
048	2a9x-m7_2_C8_G9	AAA	AA03	45	0.25	AA03
049	2a9x-m8_2_C8_G9	AAA	AA03	42	0.24	AA03
050	2a9x-m9_2_C8_G9	AAA	AA03	32	0.30	AA03
051	2a9x-m10_2_G9_U10	NAN	NANT	0	0.57	IC03
052	2a9x-m1_2_G9_U10	NAN	NANT	0	0.67	IC03
053	2a9x-m2_2_G9_U10	NAN	NANT	0	1.10	AB04
054	2a9x-m3_2_G9_U10	NAN	NANT	0	1.19	OP08
055	2a9x-m4_2_G9_U10	NAN	NANT	0	0.92	IC07
056	2a9x-m5_2_G9_U10	NAN	NANT	0	0.92	IC07
057	2a9x-m6_2_G9_U10	NAN	NANT	0	0.80	IC03
058	2a9x-m7_2_G9_U10	NAN	NANT	0	0.65	IC03
059	2a9x-m8_2_G9_U10	NAN	NANT	0	0.65	IC03
060	2a9x-m9_2_G9_U10	NAN	NANT	0	0.97	IC07
061	2a9x-m10_2_U10_G11	NAN	NANT	0	1.72	BB03
062	2a9x-m1_2_U10_G11	NAN	NANT	0	1.44	AB02
063	2a9x-m2_2_U10_G11	NAN	NANT	0	1.41	BB02
064	2a9x-m3_2_U10_G11	NAN	NANT	0	1.28	AB02
065	2a9x-m4_2_U10_G11	NAN	NANT	0	1.63	BB03
066	2a9x-m5_2_U10_G11	NAN	NANT	0	1.26	AB02
067	2a9x-m6_2_U10_G11	NAN	NANT	0	1.21	AB02
068	2a9x-m7_2_U10_G11	NAN	NANT	0	1.31	AB02
069	2a9x-m8_2_U10_G11	NAN	NANT	0	1.39	BA17
070	2a9x-m9_2_U10_G11	NAN	NANT	0	1.27	AB02
071	2a9x-m10_2_G11_U12	NAN	NANT	0	1.01	OP17
072	2a9x-m1_2_G11_U12	NAN	NANT	0	1.84	OP17
073	2a9x-m2_2_G11_U12	NAN	NANT	0	0.91	OP14
074	2a9x-m3_2_G11_U12	NAN	NANT	0	2.17	OP18
075	2a9x-m4_2_G11_U12	NAN	NANT	0	1.71	OP18
076	2a9x-m5_2_G11_U12	NAN	NANT	0	2.14	OP28
077	2a9x-m6_2_G11_U12	NAN	NANT	0	2.12	OP18
078	2a9x-m7_2_G11_U12	NAN	NANT	0	2.07	BB1S
079	2a9x-m8_2_G11_U12	NAN	NANT	0	0.98	OP17
080	2a9x-m9_2_G11_U12	NAN	NANT	0	2.10	OP18
081	2a9x-m10_2_U12_A13	NAN	NANT	0	1.04	OP13
082	2a9x-m1_2_U12_A13	NAN	NANT	0	1.29	OP31
083	2a9x-m2_2_U12_A13	NAN	NANT	0	0.82	OP31
084	2a9x-m3_2_U12_A13	NAN	NANT	0	0.79	OP13
085	2a9x-m4_2_U12_A13	NAN	NANT	0	1.61	OP17
086	2a9x-m5_2_U12_A13	NAN	NANT	0	1.99	OP19
087	2a9x-m6_2_U12_A13	NAN	NANT	0	0.69	OP17
088	2a9x-m7_2_U12_A13	NAN	NANT	0	2.16	IC03
089	2a9x-m8_2_U12_A13	NAN	NANT	0	1.17	OP14
090	2a9x-m9_2_U12_A13	NAN	NANT	0	1.16	OP13
091	2a9x-m10_2_A13_G14	NAN	NANT	0	0.74	BB13
092	2a9x-m1_2_A13_G14	NAN	NANT	0	0.58	BA09
093	2a9x-m2_2_A13_G14	NAN	NANT	0	0.61	BA09
094	2a9x-m3_2_A13_G14	NAN	NANT	0	0.47	AA11
095	2a9x-m4_2_A13_G14	NAN	NANT	0	0.56	BA09
096	2a9x-m5_2_A13_G14	NAN	NANT	0	0.57	BA09
097	2a9x-m6_2_A13_G14	NAN	NANT	0	0.60	AA11
098	2a9x-m7_2_A13_G14	NAN	NANT	0	0.62	BB13
099	2a9x-m8_2_A13_G14	NAN	NANT	0	0.77	BA09
100	2a9x-m9_2_A13_G14	NAN	NANT	0	0.47	AA11
101	2a9x-m10_2_G14_C15	NAN	NANT	0	0.64	AA10
102	2a9x-m1_2_G14_C15	NAN	NANT	0	0.67	AA10
103	2a9x-m2_2_G14_C15	NAN	NANT	0	1.64	OP24
104	2a9x-m3_2_G14_C15	NAN	NANT	0	0.56	AA11
105	2a9x-m4_2_G14_C15	NAN	NANT	0	0.54	AA11
106	2a9x-m5_2_G14_C15	NAN	NANT	0	0.69	AA10
107	2a9x-m6_2_G14_C15	NAN	NANT	0	1.63	OP24
108	2a9x-m7_2_G14_C15	NAN	NANT	0	0.54	AA11
109	2a9x-m8_2_G14_C15	NAN	NANT	0	0.35	AA11
110	2a9x-m9_2_G14_C15	NAN	NANT	0	1.61	OP24
111	2a9x-m10_2_C15_U16	NAN	NANT	0	0.64	AA11
112	2a9x-m1_2_C15_U16	NAN	NANT	0	0.47	AA11
113	2a9x-m2_2_C15_U16	NAN	NANT	0	0.47	AA10
114	2a9x-m3_2_C15_U16	NAN	NANT	0	0.35	AA01
115	2a9x-m4_2_C15_U16	AAw	AA01	6	0.45	AA01
116	2a9x-m5_2_C15_U16	NAN	NANT	0	0.46	AA11
117	2a9x-m6_2_C15_U16	NAN	NANT	0	0.37	AA01
118	2a9x-m7_2_C15_U16	AAw	AA01	9	0.34	AA01
119	2a9x-m8_2_C15_U16	NAN	NANT	0	1.04	BA09
120	2a9x-m9_2_C15_U16	NAN	NANT	0	0.47	AA01
121	2a9x-m10_2_U16_C17	NAN	NANT	0	0.74	AB2S
122	2a9x-m1_2_U16_C17	NAN	NANT	0	1.28	BB17
123	2a9x-m2_2_U16_C17	NAN	NANT	0	1.27	AB02
124	2a9x-m3_2_U16_C17	NAN	NANT	0	1.07	AA11
125	2a9x-m4_2_U16_C17	NAN	NANT	0	1.27	BB17
126	2a9x-m5_2_U16_C17	NAN	NANT	0	1.22	BB17
127	2a9x-m6_2_U16_C17	NAN	NANT	0	0.68	AB2S
128	2a9x-m7_2_U16_C17	NAN	NANT	0	1.55	OP24
129	2a9x-m8_2_U16_C17	NAN	NANT	0	1.26	AB02
130	2a9x-m9_2_U16_C17	NAN	NANT	0	1.17	AB02
131	2a9x-m10_2_C17_A18	NAN	NANT	0	1.23	BB08
132	2a9x-m1_2_C17_A18	NAN	NANT	0	1.16	AB02
133	2a9x-m2_2_C17_A18	NAN	NANT	0	0.92	AB02
134	2a9x-m3_2_C17_A18	NAN	NANT	0	0.92	BBS1
135	2a9x-m4_2_C17_A18	NAN	NANT	0	1.20	BA17
136	2a9x-m5_2_C17_A18	NAN	NANT	0	1.12	BB10
137	2a9x-m6_2_C17_A18	NAN	NANT	0	0.86	AB02
138	2a9x-m7_2_C17_A18	NAN	NANT	0	1.20	ZZS2
139	2a9x-m8_2_C17_A18	NAN	NANT	0	0.88	BB00
140	2a9x-m9_2_C17_A18	NAN	NANT	0	1.00	BBS1
141	2a9x-m10_2_A18_U19	NAN	NANT	0	1.87	AB02
142	2a9x-m1_2_A18_U19	NAN	NANT	0	1.94	BB08
143	2a9x-m2_2_A18_U19	NAN	NANT	0	1.80	BB07
144	2a9x-m3_2_A18_U19	NAN	NANT	0	1.73	BB10
145	2a9x-m4_2_A18_U19	NAN	NANT	0	1.84	BB08
146	2a9x-m5_2_A18_U19	NAN	NANT	0	1.57	BB14
147	2a9x-m6_2_A18_U19	NAN	NANT	0	1.58	BA16
148	2a9x-m7_2_A18_U19	NAN	NANT	0	1.76	BB07
149	2a9x-m8_2_A18_U19	NAN	NANT	0	1.72	BB08
150	2a9x-m9_2_A18_U19	NAN	NANT	0	1.79	BB07
151	2a9x-m10_2_U19_U20	NAN	NANT	0	2.00	OP24
152	2a9x-m1_2_U19_U20	NAN	NANT	0	1.58	BA08
153	2a9x-m2_2_U19_U20	NAN	NANT	0	1.21	OP24
154	2a9x-m3_2_U19_U20	NAN	NANT	0	1.29	BB11
155	2a9x-m4_2_U19_U20	NAN	NANT	0	1.52	BA08
156	2a9x-m5_2_U19_U20	NAN	NANT	0	1.19	OP24
157	2a9x-m6_2_U19_U20	NAN	NANT	0	1.52	AA11
158	2a9x-m7_2_U19_U20	NAN	NANT	0	1.27	AB02
159	2a9x-m8_2_U19_U20	NAN	NANT	0	1.14	OP12
160	2a9x-m9_2_U19_U20	NAN	NANT	0	1.21	BB11
161	2a9x-m10_2_U20_A21	NAN	NANT	0	1.00	OP24
162	2a9x-m1_2_U20_A21	NAN	NANT	0	1.10	OP24
163	2a9x-m2_2_U20_A21	NAN	NANT	0	1.00	OP24
164	2a9x-m3_2_U20_A21	NAN	NANT	0	0.95	OP24
165	2a9x-m4_2_U20_A21	NAN	NANT	0	1.04	OP24
166	2a9x-m5_2_U20_A21	NAN	NANT	0	1.09	OP24
167	2a9x-m6_2_U20_A21	NAN	NANT	0	1.04	OP24
168	2a9x-m7_2_U20_A21	NAN	NANT	0	0.96	OP24
169	2a9x-m8_2_U20_A21	NAN	NANT	0	1.08	OP24
170	2a9x-m9_2_U20_A21	NAN	NANT	0	1.07	OP24
171	2a9x-m10_2_A21_G22	miB	BB13	25	0.37	BB13
172	2a9x-m1_2_A21_G22	BBB	BB01	47	0.38	BB01
173	2a9x-m2_2_A21_G22	NAN	NANT	0	0.53	BB03
174	2a9x-m3_2_A21_G22	BBw	BB03	38	0.52	BB03
175	2a9x-m4_2_A21_G22	NAN	NANT	0	0.90	AB02
176	2a9x-m5_2_A21_G22	NAN	NANT	0	0.63	BB11
177	2a9x-m6_2_A21_G22	BBw	BB03	49	0.45	BB03
178	2a9x-m7_2_A21_G22	BBw	BB03	35	0.38	BB03
179	2a9x-m8_2_A21_G22	BBw	BB03	58	0.41	BB03
180	2a9x-m9_2_A21_G22	NAN	NANT	0	0.42	BA10
181	2a9x-m10_2_G22_C23	NAN	NANT	0	0.98	BA09
182	2a9x-m1_2_G22_C23	NAN	NANT	0	0.51	BB03
183	2a9x-m2_2_G22_C23	NAN	NANT	0	0.75	AB02
184	2a9x-m3_2_G22_C23	NAN	NANT	0	0.55	BA10
185	2a9x-m4_2_G22_C23	NAN	NANT	0	0.65	AB02
186	2a9x-m5_2_G22_C23	B-A	BA10	22	0.45	BA10
187	2a9x-m6_2_G22_C23	NAN	NANT	0	0.46	BA10
188	2a9x-m7_2_G22_C23	NAN	NANT	0	0.60	AA10
189	2a9x-m8_2_G22_C23	NAN	NANT	0	0.49	BA10
190	2a9x-m9_2_G22_C23	NAN	NANT	0	0.54	AA10
191	2a9x-m10_2_C23_U24	NAN	NANT	0	0.49	AA11
192	2a9x-m1_2_C23_U24	NAN	NANT	0	0.73	AA10
193	2a9x-m2_2_C23_U24	NAN	NANT	0	0.69	AA10
194	2a9x-m3_2_C23_U24	NAN	NANT	0	0.99	BA09
195	2a9x-m4_2_C23_U24	NAN	NANT	0	0.66	AA10
196	2a9x-m5_2_C23_U24	NAN	NANT	0	0.72	AA10
197	2a9x-m6_2_C23_U24	NAN	NANT	0	0.70	AA10
198	2a9x-m7_2_C23_U24	NAN	NANT	0	0.49	AA11
199	2a9x-m8_2_C23_U24	NAN	NANT	0	0.48	AA11
200	2a9x-m9_2_C23_U24	NAN	NANT	0	0.68	AA10
201	2a9x-m10_2_U24_C25	NAN	NANT	0	0.71	BA09
202	2a9x-m1_2_U24_C25	NAN	NANT	0	0.80	BB12
203	2a9x-m2_2_U24_C25	NAN	NANT	0	0.66	BA09
204	2a9x-m3_2_U24_C25	NAN	NANT	0	0.77	BB12
205	2a9x-m4_2_U24_C25	NAN	NANT	0	0.64	AA10
206	2a9x-m5_2_U24_C25	NAN	NANT	0	0.68	BA09
207	2a9x-m6_2_U24_C25	NAN	NANT	0	0.72	BA09
208	2a9x-m7_2_U24_C25	NAN	NANT	0	0.36	AA11
209	2a9x-m8_2_U24_C25	NAN	NANT	0	0.60	BA09
210	2a9x-m9_2_U24_C25	NAN	NANT	0	0.71	BA09
211	2a9x-m10_2_C25_C26	NAN	NANT	0	0.68	AA10
212	2a9x-m1_2_C25_C26	NAN	NANT	0	0.66	AA10
213	2a9x-m2_2_C25_C26	NAN	NANT	0	1.04	BA09
214	2a9x-m3_2_C25_C26	NAN	NANT	0	0.74	AA10
215	2a9x-m4_2_C25_C26	NAN	NANT	0	0.63	AA10
216	2a9x-m5_2_C25_C26	NAN	NANT	0	0.63	AA10
217	2a9x-m6_2_C25_C26	NAN	NANT	0	0.69	AA10
218	2a9x-m7_2_C25_C26	AAw	AA06	21	0.48	AA06
219	2a9x-m8_2_C25_C26	NAN	NANT	0	0.75	AA10
220	2a9x-m9_2_C25_C26	NAN	NANT	0	0.77	AA10
221	2a9x-m10_2_C26_G27	NAN	NANT	0	0.76	AB02
222	2a9x-m1_2_C26_G27	NAN	NANT	0	0.83	AB02
223	2a9x-m2_2_C26_G27	NAN	NANT	0	0.77	AB02
224	2a9x-m3_2_C26_G27	NAN	NANT	0	0.81	AB02
225	2a9x-m4_2_C26_G27	NAN	NANT	0	0.80	AB02
226	2a9x-m5_2_C26_G27	NAN	NANT	0	0.83	AB02
227	2a9x-m6_2_C26_G27	NAN	NANT	0	0.82	AB02
228	2a9x-m7_2_C26_G27	NAN	NANT	0	0.79	AB02
229	2a9x-m8_2_C26_G27	NAN	NANT	0	0.78	AB02
230	2a9x-m9_2_C26_G27	NAN	NANT	0	0.78	AB02
231	2a9x-m10_2_G27_A28	AAA	AA04	62	0.23	AA04
232	2a9x-m1_2_G27_A28	AAA	AA00	32	0.31	AA00
233	2a9x-m2_2_G27_A28	AAA	AA00	36	0.30	AA00
234	2a9x-m3_2_G27_A28	AAA	AA00	39	0.31	AA00
235	2a9x-m4_2_G27_A28	AAA	AA00	25	0.31	AA00
236	2a9x-m5_2_G27_A28	AAA	AA00	33	0.31	AA00
237	2a9x-m6_2_G27_A28	AAA	AA00	35	0.30	AA00
238	2a9x-m7_2_G27_A28	AAA	AA00	35	0.32	AA00
239	2a9x-m8_2_G27_A28	AAA	AA00	31	0.33	AA00
240	2a9x-m9_2_G27_A28	AAA	AA00	35	0.30	AA00
241	2a9x-m10_2_A28_G29	AAA	AA08	64	0.26	AA08
242	2a9x-m1_2_A28_G29	AAA	AA08	68	0.23	AA08
243	2a9x-m2_2_A28_G29	AAA	AA00	64	0.23	AA00
244	2a9x-m3_2_A28_G29	AAA	AA08	66	0.22	AA08
245	2a9x-m4_2_A28_G29	AAA	AA08	60	0.24	AA08
246	2a9x-m5_2_A28_G29	AAA	AA08	62	0.23	AA08
247	2a9x-m6_2_A28_G29	AAA	AA00	69	0.24	AA00
248	2a9x-m7_2_A28_G29	AAA	AA08	66	0.26	AA08
249	2a9x-m8_2_A28_G29	AAA	AA08	63	0.25	AA08
250	2a9x-m9_2_A28_G29	AAA	AA08	61	0.25	AA08
251	2a9x-m10_2_G29_C30	AAA	AA08	33	0.28	AA08
252	2a9x-m1_2_G29_C30	AAA	AA08	35	0.27	AA08
253	2a9x-m2_2_G29_C30	AAA	AA08	32	0.23	AA08
254	2a9x-m3_2_G29_C30	AAA	AA08	34	0.26	AA08
255	2a9x-m4_2_G29_C30	AAA	AA04	72	0.24	AA04
256	2a9x-m5_2_G29_C30	AAA	AA08	33	0.26	AA08
257	2a9x-m6_2_G29_C30	AAA	AA08	36	0.26	AA08
258	2a9x-m7_2_G29_C30	AAA	AA08	35	0.28	AA08
259	2a9x-m8_2_G29_C30	AAA	AA08	32	0.24	AA08
260	2a9x-m9_2_G29_C30	AAA	AA08	35	0.28	AA08
261	2a9x-m10_2_C30_C31	AAA	AA08	8	0.37	AA08
262	2a9x-m1_2_C30_C31	AAA	AA00	23	0.38	AA00
263	2a9x-m2_2_C30_C31	AAA	AA00	21	0.41	AA00
264	2a9x-m3_2_C30_C31	AAA	AA00	20	0.42	AA00
265	2a9x-m4_2_C30_C31	AAA	AA00	31	0.35	AA00
266	2a9x-m5_2_C30_C31	AAA	AA00	24	0.37	AA00
267	2a9x-m6_2_C30_C31	AAA	AA00	21	0.35	AA00
268	2a9x-m7_2_C30_C31	AAA	AA00	6	0.46	AA00
269	2a9x-m8_2_C30_C31	AAA	AA04	37	0.47	AA04
270	2a9x-m9_2_C30_C31	AAA	AA08	9	0.35	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

Results of the assignment of 270 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible