Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2a66_B_DG201_DT202 | BBB | BB00 | 88 | 0.20 |
| 02 | 2a66_B_DT202_DT203 | BBw | BB02 | 81 | 0.19 |
| 03 | 2a66_B_DT203_DC204 | BBB | BB00 | 36 | 0.51 |
| 04 | 2a66_B_DC204_DA205 | BB2 | BB07 | 81 | 0.22 |
| 05 | 2a66_B_DA205_DA206 | B12 | BB04 | 59 | 0.21 |
| 06 | 2a66_B_DA206_DG207 | BBB | BB00 | 67 | 0.32 |
| 07 | 2a66_B_DG207_DG208 | BBB | BB00 | 78 | 0.24 |
| 08 | 2a66_B_DG208_DC209 | BBB | BB00 | 89 | 0.21 |
| 09 | 2a66_B_DC209_DC210 | BBB | BB00 | 93 | 0.22 |
| 10 | 2a66_B_DC210_DA211 | BB2 | BB07 | 96 | 0.27 |
| 11 | 2a66_B_DA211_DG212 | BBB | BB00 | 89 | 0.15 |
| 12 | 2a66_C_DC301_DT302 | BBB | BB00 | 88 | 0.15 |
| 13 | 2a66_C_DT302_DG303 | BBB | BB00 | 81 | 0.27 |
| 14 | 2a66_C_DG303_DG304 | BB2 | BB07 | 77 | 0.23 |
| 15 | 2a66_C_DG304_DC305 | BBB | BB00 | 87 | 0.15 |
| 16 | 2a66_C_DC305_DC306 | BBB | BB00 | 77 | 0.23 |
| 17 | 2a66_C_DC306_DT307 | BBB | BB00 | 81 | 0.20 |
| 18 | 2a66_C_DT307_DT308 | BBB | BB00 | 95 | 0.11 |
| 19 | 2a66_C_DT308_DG309 | BBB | BB00 | 68 | 0.38 |
| 20 | 2a66_C_DG309_DA310 | BB2 | BB07 | 88 | 0.39 |
| 21 | 2a66_C_DA310_DA311 | BBB | BB00 | 91 | 0.14 |
| 22 | 2a66_C_DA311_DC312 | B-A | BA05 | 83 | 0.13 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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