Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of Foxp2 bound Specifically to DNA.

Results of the assignment of 80 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012a07_A_DA1_DA2NANNANT00.71 BB13
022a07_A_DA2_DC3NANNANT00.52 BB02
032a07_A_DC3_DT4BBBBB00640.33 BB00
042a07_A_DT4_DA5BBBBB00860.18 BB00
052a07_A_DA5_DT6BBBBB00870.17 BB00
062a07_A_DT6_DG7B12BB04800.30 BB04
072a07_A_DG7_DA8BBBBB00770.26 BB00
082a07_A_DA8_DA9BBwBB02910.17 BB02
092a07_A_DA9_DA10BBBBB00720.26 BB00
102a07_A_DA10_DC11BBwBB02650.11 BB02
112a07_A_DC11_DA12BBBBB00950.16 BB00
122a07_A_DA12_DA13BBwBB02800.19 BB02
132a07_A_DA13_DA14BBBBB00840.28 BB00
142a07_A_DA14_DT15BBwBB02870.15 BB02
152a07_A_DT15_DT16BBwBB02810.21 BB02
162a07_A_DT16_DT17BBBBB00790.17 BB00
172a07_A_DT17_DT18BBwBB02930.15 BB02
182a07_A_DT18_DC19BBBBB00880.18 BB00
192a07_A_DC19_DC20BBwBB02950.12 BB02
202a07_A_DC20_DT21BBwBB03860.30 BB03
212a07_B_DT1_DT2BBwBB02180.44 BB02
222a07_B_DT2_DA3BBwBB02430.40 BB02
232a07_B_DA3_DG4BBwBB03940.14 BB03
242a07_B_DG4_DG5NANNANT00.49 BB02
252a07_B_DG5_DA6BBBBB00800.26 BB00
262a07_B_DA6_DA7BBwBB02890.28 BB02
272a07_B_DA7_DA8BBBBB00500.32 BB00
282a07_B_DA8_DA9BBwBB02870.15 BB02
292a07_B_DA9_DT10BBBBB00840.20 BB00
302a07_B_DT10_DT11BBwBB02830.15 BB02
312a07_B_DT11_DT12BBwBB02860.26 BB02
322a07_B_DT12_DG13BBBBB00860.23 BB00
332a07_B_DG13_DT14BBBBB00820.30 BB00
342a07_B_DT14_DT15BBBBB00910.17 BB00
352a07_B_DT15_DT16BBBBB00880.20 BB00
362a07_B_DT16_DC17BBBBB00910.13 BB00
372a07_B_DC17_DA18BBBBB00940.16 BB00
382a07_B_DA18_DT19BBwBB02770.12 BB02
392a07_B_DT19_DA20BB2BB07400.27 BB07
402a07_B_DA20_DG21BBwBB03940.00 BB03
412a07_C_DA1_DA2NANNANT00.74 BB13
422a07_C_DA2_DC3NANNANT00.49 BB02
432a07_C_DC3_DT4BBBBB00590.32 BB00
442a07_C_DT4_DA5BBBBB00850.20 BB00
452a07_C_DA5_DT6BBBBB00870.17 BB00
462a07_C_DT6_DG7B12BB04830.30 BB04
472a07_C_DG7_DA8BBBBB00800.26 BB00
482a07_C_DA8_DA9BBwBB02900.18 BB02
492a07_C_DA9_DA10BBBBB00730.26 BB00
502a07_C_DA10_DC11BBwBB02700.12 BB02
512a07_C_DC11_DA12BBBBB00940.18 BB00
522a07_C_DA12_DA13BBwBB02690.23 BB02
532a07_C_DA13_DA14BBBBB00780.28 BB00
542a07_C_DA14_DT15BBwBB02860.16 BB02
552a07_C_DT15_DT16BBwBB02860.21 BB02
562a07_C_DT16_DT17BBBBB00780.17 BB00
572a07_C_DT17_DT18BBwBB02900.15 BB02
582a07_C_DT18_DC19BBBBB00850.18 BB00
592a07_C_DC19_DC20BBwBB02940.12 BB02
602a07_C_DC20_DT21BBwBB03850.30 BB03
612a07_D_DT1_DT2B12BB04760.20 BB04
622a07_D_DT2_DA3BBwBB02620.27 BB02
632a07_D_DA3_DG4miBBB13920.24 BB13
642a07_D_DG4_DG5NANNANT00.57 BB02
652a07_D_DG5_DA6BBBBB00860.20 BB00
662a07_D_DA6_DA7BBBBB00840.23 BB00
672a07_D_DA7_DA8BBBBB00920.13 BB00
682a07_D_DA8_DA9BBwBB02860.15 BB02
692a07_D_DA9_DT10BBBBB00830.21 BB00
702a07_D_DT10_DT11BBwBB02810.14 BB02
712a07_D_DT11_DT12BBwBB02900.26 BB02
722a07_D_DT12_DG13BBBBB00850.21 BB00
732a07_D_DG13_DT14BBBBB00820.29 BB00
742a07_D_DT14_DT15BBBBB00890.19 BB00
752a07_D_DT15_DT16BBBBB00870.19 BB00
762a07_D_DT16_DC17BBBBB00910.13 BB00
772a07_D_DC17_DA18BBBBB00940.15 BB00
782a07_D_DA18_DT19BBBBB00910.14 BB00
792a07_D_DT19_DA20BB2BB07870.21 BB07
802a07_D_DA20_DG21BBBBB00850.27 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N