Conformers:
ABBIImiBZICOPNSYNN
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NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 28sr_A_G1_G2 | NAN | NANT | 0 | 0.85 |
| 02 | 28sr_A_G2_C3 | AAA | AA04 | 59 | 0.42 |
| 03 | 28sr_A_C3_G4 | AAA | AA00 | 83 | 0.14 |
| 04 | 28sr_A_G4_U5 | AAA | AA00 | 37 | 0.28 |
| 05 | 28sr_A_U5_C6 | NAN | NANT | 0 | 0.89 |
| 06 | 28sr_A_C6_A7 | NAN | NANT | 0 | 1.37 |
| 07 | 28sr_A_A7_G8 | NAN | NANT | 0 | 0.74 |
| 08 | 28sr_A_G8_G9 | NAN | NANT | 0 | 0.81 |
| 09 | 28sr_A_G9_U10 | AAw | AA01 | 54 | 0.30 |
| 10 | 28sr_A_U10_C11 | AAA | AA00 | 81 | 0.32 |
| 11 | 28sr_A_C11_C12 | AAA | AA00 | 61 | 0.23 |
| 12 | 28sr_A_C12_G13 | AAA | AA00 | 23 | 0.43 |
| 13 | 28sr_A_G13_G14 | NAN | NANT | 0 | 0.86 |
| 14 | 28sr_A_G14_A15 | AAA | AA04 | 13 | 0.52 |
| 15 | 28sr_A_A15_A16 | NAN | NANT | 0 | 1.15 |
| 16 | 28sr_A_A16_G17 | AAw | AA05 | 28 | 0.43 |
| 17 | 28sr_A_G17_G18 | AAA | AA00 | 60 | 0.31 |
| 18 | 28sr_A_G18_A19 | AAA | AA00 | 65 | 0.24 |
| 19 | 28sr_A_A19_A20 | AAw | AA11 | 63 | 0.20 |
| 20 | 28sr_A_A20_G21 | AAw | AA05 | 49 | 0.29 |
| 21 | 28sr_A_G21_C22 | NAN | NANT | 0 | 0.99 |
| 22 | 28sr_A_C22_A23 | NAN | NANT | 0 | 1.46 |
| 23 | 28sr_A_A23_G24 | NAN | NANT | 0 | 0.88 |
| 24 | 28sr_A_G24_C25 | AAA | AA00 | 72 | 0.28 |
| 25 | 28sr_A_C25_G26 | AAA | AA00 | 63 | 0.24 |
| 26 | 28sr_A_G26_C27 | AAA | AA00 | 49 | 0.33 |
| 27 | 28sr_A_C27_C28 | NAN | NANT | 0 | 0.96 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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