DNATCO v4.1: results

NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA

Results of the assignment of 189 detected steps in 7 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	28sp-m1_A_G1_G2	NAN	NANT	0	1.02	AA05
002	28sp-m2_A_G1_G2	NAN	NANT	0	0.77	AA05
003	28sp-m3_A_G1_G2	NAN	NANT	0	0.64	AA08
004	28sp-m4_A_G1_G2	AAA	AA08	43	0.69	AA08
005	28sp-m5_A_G1_G2	NAN	NANT	0	1.17	AA01
006	28sp-m6_A_G1_G2	NAN	NANT	0	0.77	AA11
007	28sp-m7_A_G1_G2	NAN	NANT	0	0.53	AA04
008	28sp-m1_A_G2_C3	AAA	AA00	72	0.23	AA00
009	28sp-m2_A_G2_C3	AAA	AA00	64	0.27	AA00
010	28sp-m3_A_G2_C3	AAA	AA00	22	0.46	AA00
011	28sp-m4_A_G2_C3	AAA	AA04	58	0.46	AA04
012	28sp-m5_A_G2_C3	AAA	AA00	11	0.50	AA00
013	28sp-m6_A_G2_C3	NAN	NANT	0	0.48	AA08
014	28sp-m7_A_G2_C3	AAA	AA00	24	0.42	AA00
015	28sp-m1_A_C3_G4	AAA	AA00	91	0.12	AA00
016	28sp-m2_A_C3_G4	AAA	AA00	93	0.14	AA00
017	28sp-m3_A_C3_G4	AAA	AA00	87	0.16	AA00
018	28sp-m4_A_C3_G4	AAA	AA00	77	0.16	AA00
019	28sp-m5_A_C3_G4	AAA	AA00	67	0.25	AA00
020	28sp-m6_A_C3_G4	NAN	NANT	0	0.33	AA08
021	28sp-m7_A_C3_G4	AAA	AA00	92	0.18	AA00
022	28sp-m1_A_G4_U5	AAA	AA00	48	0.23	AA00
023	28sp-m2_A_G4_U5	AAA	AA00	50	0.29	AA00
024	28sp-m3_A_G4_U5	AAw	AA01	35	0.29	AA01
025	28sp-m4_A_G4_U5	NAN	NANT	0	1.24	OP24
026	28sp-m5_A_G4_U5	AAA	AA00	38	0.33	AA00
027	28sp-m6_A_G4_U5	AAA	AA04	67	0.29	AA04
028	28sp-m7_A_G4_U5	AAw	AA01	40	0.28	AA01
029	28sp-m1_A_U5_C6	NAN	NANT	0	0.94	AB02
030	28sp-m2_A_U5_C6	AAA	AA00	54	0.34	AA00
031	28sp-m3_A_U5_C6	NAN	NANT	0	0.97	AB02
032	28sp-m4_A_U5_C6	NAN	NANT	0	0.95	AB02
033	28sp-m5_A_U5_C6	NAN	NANT	0	0.96	AB02
034	28sp-m6_A_U5_C6	NAN	NANT	0	0.87	AB02
035	28sp-m7_A_U5_C6	NAN	NANT	0	0.97	AB02
036	28sp-m1_A_C6_A7	NAN	NANT	0	1.46	AA11
037	28sp-m2_A_C6_A7	NAN	NANT	0	1.16	AA01
038	28sp-m3_A_C6_A7	NAN	NANT	0	1.39	AA11
039	28sp-m4_A_C6_A7	NAN	NANT	0	1.37	AA11
040	28sp-m5_A_C6_A7	NAN	NANT	0	1.31	AA11
041	28sp-m6_A_C6_A7	NAN	NANT	0	0.78	IC07
042	28sp-m7_A_C6_A7	NAN	NANT	0	1.41	AA11
043	28sp-m1_A_A7_G8	NAN	NANT	0	0.81	AB04
044	28sp-m2_A_A7_G8	NAN	NANT	0	0.70	AB04
045	28sp-m3_A_A7_G8	NAN	NANT	0	0.88	AA00
046	28sp-m4_A_A7_G8	NAN	NANT	0	0.76	AB04
047	28sp-m5_A_A7_G8	NAN	NANT	0	0.83	AB02
048	28sp-m6_A_A7_G8	NAN	NANT	0	0.91	AB02
049	28sp-m7_A_A7_G8	NAN	NANT	0	0.77	AA01
050	28sp-m1_A_G8_G9	NAN	NANT	0	1.14	BA09
051	28sp-m2_A_G8_G9	NAN	NANT	0	0.88	AA11
052	28sp-m3_A_G8_G9	NAN	NANT	0	0.89	AA11
053	28sp-m4_A_G8_G9	NAN	NANT	0	0.68	AA05
054	28sp-m5_A_G8_G9	NAN	NANT	0	0.82	AA11
055	28sp-m6_A_G8_G9	NAN	NANT	0	0.81	AA11
056	28sp-m7_A_G8_G9	NAN	NANT	0	0.66	AA05
057	28sp-m1_A_G9_U10	AAw	AA01	54	0.30	AA01
058	28sp-m2_A_G9_U10	AAw	AA01	37	0.39	AA01
059	28sp-m3_A_G9_U10	AAw	AA01	33	0.42	AA01
060	28sp-m4_A_G9_U10	AAw	AA01	57	0.34	AA01
061	28sp-m5_A_G9_U10	AAw	AA01	68	0.30	AA01
062	28sp-m6_A_G9_U10	NAN	NANT	0	1.13	OP24
063	28sp-m7_A_G9_U10	AAA	AA00	54	0.31	AA00
064	28sp-m1_A_U10_C11	AAA	AA00	83	0.28	AA00
065	28sp-m2_A_U10_C11	AAA	AA00	77	0.32	AA00
066	28sp-m3_A_U10_C11	AAA	AA00	77	0.32	AA00
067	28sp-m4_A_U10_C11	AAA	AA00	79	0.31	AA00
068	28sp-m5_A_U10_C11	AAA	AA00	83	0.29	AA00
069	28sp-m6_A_U10_C11	AAA	AA00	87	0.22	AA00
070	28sp-m7_A_U10_C11	AAA	AA00	84	0.26	AA00
071	28sp-m1_A_C11_C12	AAA	AA00	65	0.23	AA00
072	28sp-m2_A_C11_C12	AAA	AA00	67	0.23	AA00
073	28sp-m3_A_C11_C12	AAA	AA00	61	0.23	AA00
074	28sp-m4_A_C11_C12	AAA	AA00	63	0.22	AA00
075	28sp-m5_A_C11_C12	AAA	AA00	64	0.22	AA00
076	28sp-m6_A_C11_C12	NAN	NANT	0	0.38	AB04
077	28sp-m7_A_C11_C12	AAA	AA00	54	0.24	AA00
078	28sp-m1_A_C12_G13	AAA	AA00	17	0.44	AA00
079	28sp-m2_A_C12_G13	AAA	AA00	22	0.41	AA00
080	28sp-m3_A_C12_G13	AAA	AA00	10	0.47	AA00
081	28sp-m4_A_C12_G13	AAA	AA00	15	0.43	AA00
082	28sp-m5_A_C12_G13	AAA	AA00	25	0.41	AA00
083	28sp-m6_A_C12_G13	NAN	NANT	0	0.56	AA09
084	28sp-m7_A_C12_G13	AAA	AA00	12	0.50	AA00
085	28sp-m1_A_G13_G14	NAN	NANT	0	0.47	OP04
086	28sp-m2_A_G13_G14	NAN	NANT	0	0.85	OP09
087	28sp-m3_A_G13_G14	NAN	NANT	0	0.88	OP09
088	28sp-m4_A_G13_G14	NAN	NANT	0	0.85	OP09
089	28sp-m5_A_G13_G14	NAN	NANT	0	0.87	OP09
090	28sp-m6_A_G13_G14	NAN	NANT	0	0.88	OP09
091	28sp-m7_A_G13_G14	NAN	NANT	0	0.85	OP04
092	28sp-m1_A_G14_A15	AAw	AA05	15	0.59	AA05
093	28sp-m2_A_G14_A15	AAA	AA04	22	0.52	AA04
094	28sp-m3_A_G14_A15	AAA	AA04	18	0.54	AA04
095	28sp-m4_A_G14_A15	AAA	AA04	19	0.48	AA04
096	28sp-m5_A_G14_A15	AAA	AA04	23	0.52	AA04
097	28sp-m6_A_G14_A15	NAN	NANT	0	0.65	AA00
098	28sp-m7_A_G14_A15	NAN	NANT	0	0.56	BB16
099	28sp-m1_A_A15_A16	AAw	AA11	23	0.21	AA11
100	28sp-m2_A_A15_A16	AAw	AA11	22	0.21	AA11
101	28sp-m3_A_A15_A16	NAN	NANT	0	0.45	AA11
102	28sp-m4_A_A15_A16	NAN	NANT	0	0.67	AB02
103	28sp-m5_A_A15_A16	AAw	AA11	20	0.22	AA11
104	28sp-m6_A_A15_A16	NAN	NANT	0	0.62	AB02
105	28sp-m7_A_A15_A16	NAN	NANT	0	0.52	AB02
106	28sp-m1_A_A16_G17	NAN	NANT	0	0.86	AA01
107	28sp-m2_A_A16_G17	NAN	NANT	0	0.55	AA05
108	28sp-m3_A_A16_G17	AAw	AA05	28	0.42	AA05
109	28sp-m4_A_A16_G17	AAw	AA05	28	0.42	AA05
110	28sp-m5_A_A16_G17	NAN	NANT	0	0.58	AA05
111	28sp-m6_A_A16_G17	NAN	NANT	0	0.79	AA05
112	28sp-m7_A_A16_G17	NAN	NANT	0	0.52	AA05
113	28sp-m1_A_G17_G18	AAA	AA00	66	0.29	AA00
114	28sp-m2_A_G17_G18	AAA	AA00	51	0.36	AA00
115	28sp-m3_A_G17_G18	AAA	AA00	52	0.35	AA00
116	28sp-m4_A_G17_G18	AAA	AA00	62	0.29	AA00
117	28sp-m5_A_G17_G18	AAA	AA00	64	0.30	AA00
118	28sp-m6_A_G17_G18	AAA	AA00	55	0.41	AA00
119	28sp-m7_A_G17_G18	AAA	AA00	64	0.28	AA00
120	28sp-m1_A_G18_A19	AAA	AA00	59	0.25	AA00
121	28sp-m2_A_G18_A19	AAA	AA00	81	0.23	AA00
122	28sp-m3_A_G18_A19	AAA	AA00	77	0.25	AA00
123	28sp-m4_A_G18_A19	AAA	AA00	57	0.25	AA00
124	28sp-m5_A_G18_A19	AAA	AA00	70	0.22	AA00
125	28sp-m6_A_G18_A19	AAA	AA00	85	0.20	AA00
126	28sp-m7_A_G18_A19	AAA	AA00	69	0.19	AA00
127	28sp-m1_A_A19_A20	AAw	AA11	41	0.23	AA11
128	28sp-m2_A_A19_A20	AAw	AA01	32	0.39	AA01
129	28sp-m3_A_A19_A20	AAA	AA00	67	0.25	AA00
130	28sp-m4_A_A19_A20	AAw	AA11	36	0.25	AA11
131	28sp-m5_A_A19_A20	AAw	AA11	67	0.19	AA11
132	28sp-m6_A_A19_A20	AAA	AA00	69	0.24	AA00
133	28sp-m7_A_A19_A20	NAN	NANT	0	0.45	AA11
134	28sp-m1_A_A20_G21	AAw	AA05	56	0.30	AA05
135	28sp-m2_A_A20_G21	NAN	NANT	0	0.87	AA03
136	28sp-m3_A_A20_G21	NAN	NANT	0	0.44	AA05
137	28sp-m4_A_A20_G21	AAw	AA05	48	0.35	AA05
138	28sp-m5_A_A20_G21	AAw	AA05	59	0.27	AA05
139	28sp-m6_A_A20_G21	NAN	NANT	0	0.41	AA05
140	28sp-m7_A_A20_G21	AAw	AA05	45	0.34	AA05
141	28sp-m1_A_G21_C22	NAN	NANT	0	1.01	AA05
142	28sp-m2_A_G21_C22	NAN	NANT	0	1.03	AA01
143	28sp-m3_A_G21_C22	NAN	NANT	0	1.13	AA01
144	28sp-m4_A_G21_C22	NAN	NANT	0	0.95	AA05
145	28sp-m5_A_G21_C22	NAN	NANT	0	1.85	OP24
146	28sp-m6_A_G21_C22	NAN	NANT	0	1.10	AA01
147	28sp-m7_A_G21_C22	NAN	NANT	0	1.11	AA01
148	28sp-m1_A_C22_A23	NAN	NANT	0	1.47	AA11
149	28sp-m2_A_C22_A23	NAN	NANT	0	0.90	OP08
150	28sp-m3_A_C22_A23	NAN	NANT	0	1.44	AA11
151	28sp-m4_A_C22_A23	NAN	NANT	0	1.46	AA11
152	28sp-m5_A_C22_A23	NAN	NANT	0	1.36	AA11
153	28sp-m6_A_C22_A23	NAN	NANT	0	1.42	AA11
154	28sp-m7_A_C22_A23	NAN	NANT	0	1.46	AA11
155	28sp-m1_A_A23_G24	NAN	NANT	0	0.79	AA00
156	28sp-m2_A_A23_G24	NAN	NANT	0	0.81	AA04
157	28sp-m3_A_A23_G24	NAN	NANT	0	0.88	AA04
158	28sp-m4_A_A23_G24	NAN	NANT	0	0.89	AA05
159	28sp-m5_A_A23_G24	NAN	NANT	0	0.84	AA05
160	28sp-m6_A_A23_G24	NAN	NANT	0	0.89	AA04
161	28sp-m7_A_A23_G24	NAN	NANT	0	0.89	AA00
162	28sp-m1_A_G24_C25	AAA	AA00	71	0.29	AA00
163	28sp-m2_A_G24_C25	AAA	AA00	71	0.29	AA00
164	28sp-m3_A_G24_C25	AAA	AA00	53	0.33	AA00
165	28sp-m4_A_G24_C25	AAA	AA00	81	0.24	AA00
166	28sp-m5_A_G24_C25	AAA	AA00	57	0.33	AA00
167	28sp-m6_A_G24_C25	AAA	AA00	60	0.26	AA00
168	28sp-m7_A_G24_C25	AAA	AA00	78	0.24	AA00
169	28sp-m1_A_C25_G26	AAA	AA00	75	0.21	AA00
170	28sp-m2_A_C25_G26	AAA	AA00	73	0.22	AA00
171	28sp-m3_A_C25_G26	AAA	AA00	69	0.24	AA00
172	28sp-m4_A_C25_G26	AAA	AA00	73	0.18	AA00
173	28sp-m5_A_C25_G26	NAN	NANT	0	0.70	IC02
174	28sp-m6_A_C25_G26	NAN	NANT	0	0.89	IC04
175	28sp-m7_A_C25_G26	AAA	AA00	53	0.25	AA00
176	28sp-m1_A_G26_C27	AAA	AA00	52	0.30	AA00
177	28sp-m2_A_G26_C27	AAA	AA00	67	0.21	AA00
178	28sp-m3_A_G26_C27	AAA	AA04	71	0.25	AA04
179	28sp-m4_A_G26_C27	AAA	AA00	48	0.30	AA00
180	28sp-m5_A_G26_C27	NAN	NANT	0	1.40	AA04
181	28sp-m6_A_G26_C27	NAN	NANT	0	1.21	AAS1
182	28sp-m7_A_G26_C27	AAA	AA04	65	0.42	AA04
183	28sp-m1_A_C27_C28	NAN	NANT	0	1.26	OP04
184	28sp-m2_A_C27_C28	NAN	NANT	0	0.89	ZZ01
185	28sp-m3_A_C27_C28	NAN	NANT	0	1.00	ZZ01
186	28sp-m4_A_C27_C28	NAN	NANT	0	0.96	AA12
187	28sp-m5_A_C27_C28	NAN	NANT	0	0.91	AA02
188	28sp-m6_A_C27_C28	AAA	AA08	16	0.67	AA08
189	28sp-m7_A_C27_C28	AAA	AA00	7	0.49	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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OPN

Z

N

Results of the assignment of 189 detected steps in 7 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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