Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 219d_A_DG1_DC2 | AAA | AA00 | 28 | 0.33 |
| 02 | 219d_A_DC2_DT3 | NAN | NANT | 0 | 0.72 |
| 03 | 219d_A_DT3_DA4 | NAN | NANT | 0 | 0.34 |
| 04 | 219d_A_DA4_DT5 | NAN | NANT | 0 | 0.59 |
| 05 | 219d_A_DT5_DA6 | BBw | BB16 | 22 | 0.55 |
| 06 | 219d_A_DA6_DA7 | BBB | BB01 | 7 | 0.38 |
| 07 | 219d_A_DA7_PST8 | NAN | NANT | 0 | 0.58 |
| 08 | 219d_A_PST8_DG9 | BBB | BB01 | 49 | 0.24 |
| 09 | 219d_A_DG9_DG10 | NAN | NANT | 0 | 0.40 |
| 10 | 219d_B_C11_C12 | AAA | AA00 | 72 | 0.24 |
| 11 | 219d_B_C12_A13 | AAw | AA01 | 61 | 0.23 |
| 12 | 219d_B_A13_U14 | NAN | NANT | 0 | 0.42 |
| 13 | 219d_B_U14_U15 | AAw | AA01 | 48 | 0.27 |
| 14 | 219d_B_U15_A16 | AAA | AA00 | 74 | 0.34 |
| 15 | 219d_B_A16_U17 | AAw | AA01 | 64 | 0.32 |
| 16 | 219d_B_U17_A18 | AAA | AA00 | 28 | 0.34 |
| 17 | 219d_B_A18_G19 | AAw | AA01 | 64 | 0.29 |
| 18 | 219d_B_G19_C20 | NAN | NANT | 0 | 0.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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