Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of ParB bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1zx4_T_DG14_DC15 | BBB | BB00 | 41 | 0.35 |
| 02 | 1zx4_T_DC15_DG16 | BBw | BB11 | 70 | 0.53 |
| 03 | 1zx4_T_DG16_DA17 | BBw | BB16 | 64 | 0.54 |
| 04 | 1zx4_T_DA17_DT18 | BBB | BB00 | 87 | 0.23 |
| 05 | 1zx4_T_DT18_DT19 | BBB | BB00 | 83 | 0.21 |
| 06 | 1zx4_T_DT19_DT20 | BBB | BB00 | 92 | 0.19 |
| 07 | 1zx4_T_DT20_DC21 | BBB | BB00 | 92 | 0.14 |
| 08 | 1zx4_T_DC21_DA22 | B12 | BB04 | 83 | 0.21 |
| 09 | 1zx4_T_DA22_DA23 | BBB | BB00 | 81 | 0.27 |
| 10 | 1zx4_T_DA23_DG24 | miB | BB12 | 19 | 0.56 |
| 11 | 1zx4_T_DG24_DG25 | BBw | BB03 | 33 | 0.31 |
| 12 | 1zx4_T_DG25_DT26 | NAN | NANT | 0 | 0.38 |
| 13 | 1zx4_T_DT26_DG27 | BBB | BB00 | 79 | 0.34 |
| 14 | 1zx4_T_DG27_DA28 | B12 | BB04 | 79 | 0.21 |
| 15 | 1zx4_T_DA28_DA29 | BBB | BB00 | 85 | 0.19 |
| 16 | 1zx4_T_DA29_DA30 | BBB | BB00 | 83 | 0.23 |
| 17 | 1zx4_T_DA30_DT31 | BBw | BB02 | 75 | 0.20 |
| 18 | 1zx4_T_DT31_DC32 | BBB | BB00 | 59 | 0.23 |
| 19 | 1zx4_T_DC32_DG33 | BBw | BB02 | 68 | 0.29 |
| 20 | 1zx4_T_DG33_DC34 | BBB | BB00 | 53 | 0.34 |
| 21 | 1zx4_T_DC34_DC35 | BBB | BB00 | 79 | 0.27 |
| 22 | 1zx4_T_DC35_DA36 | miB | BB10 | 85 | 0.28 |
| 23 | 1zx4_T_DA36_DC37 | miB | BB10 | 89 | 0.31 |
| 24 | 1zx4_T_DC37_DG38 | BBB | BB00 | 24 | 0.49 |
| 25 | 1zx4_S_DC3_DG4 | BBB | BB00 | 51 | 0.39 |
| 26 | 1zx4_S_DG4_DT5 | BBw | BB02 | 81 | 0.19 |
| 27 | 1zx4_S_DT5_DG6 | BBB | BB00 | 69 | 0.30 |
| 28 | 1zx4_S_DG6_DG7 | BBB | BB00 | 82 | 0.20 |
| 29 | 1zx4_S_DG7_DC8 | BBB | BB00 | 69 | 0.26 |
| 30 | 1zx4_S_DC8_DG9 | BB2 | BB07 | 91 | 0.19 |
| 31 | 1zx4_S_DG9_DA10 | BBB | BB01 | 20 | 0.23 |
| 32 | 1zx4_S_DA10_DT11 | BBB | BB00 | 74 | 0.21 |
| 33 | 1zx4_S_DT11_DT12 | BBB | BB00 | 89 | 0.16 |
| 34 | 1zx4_S_DT12_DT13 | BBB | BB00 | 91 | 0.23 |
| 35 | 1zx4_S_DT13_DC14 | BBB | BB00 | 57 | 0.24 |
| 36 | 1zx4_S_DC14_DA15 | miB | BB10 | 61 | 0.40 |
| 37 | 1zx4_S_DA15_DC16 | BBB | BB00 | 68 | 0.32 |
| 38 | 1zx4_S_DC16_DC17 | BBw | BB02 | 46 | 0.26 |
| 39 | 1zx4_S_DC17_DT18 | BBB | BB00 | 58 | 0.29 |
| 40 | 1zx4_S_DT18_DT19 | BBw | BB02 | 41 | 0.30 |
| 41 | 1zx4_S_DT19_DG20 | B12 | BB04 | 78 | 0.31 |
| 42 | 1zx4_S_DG20_DA21 | BBB | BB00 | 89 | 0.21 |
| 43 | 1zx4_S_DA21_DA22 | B12 | BB04 | 36 | 0.39 |
| 44 | 1zx4_S_DA22_DA23 | B12 | BB04 | 85 | 0.21 |
| 45 | 1zx4_S_DA23_DT24 | BBB | BB00 | 66 | 0.33 |
| 46 | 1zx4_S_DT24_DC25 | BBB | BB00 | 87 | 0.29 |
| 47 | 1zx4_S_DC25_DG26 | BBB | BB00 | 52 | 0.47 |
| 48 | 1zx4_S_DG26_DC27 | NAN | NANT | 0 | 0.62 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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