DNATCO v4.1: results

4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6C;17G]ICAP38 DNA

Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1zrf_W_DT-6_DT-5	NAN	NANT	0	0.39	BB02
02	1zrf_W_DT-5_DC-4	BBB	BB00	74	0.31	BB00
03	1zrf_W_DC-4_DG-3	B12	BB04	87	0.26	BB04
04	1zrf_W_DG-3_DA-2	miB	BB12	27	0.55	BB12
05	1zrf_W_DA-2_DA-1	BBB	BB00	42	0.45	BB00
06	1zrf_W_DA-1_DA1	BBB	BB00	74	0.23	BB00
07	1zrf_W_DA1_DA2	NAN	NANT	0	0.68	BB07
08	1zrf_W_DA2_DA3	BBB	BB00	70	0.20	BB00
09	1zrf_W_DA3_DT4	BBB	BB01	87	0.11	BB01
10	1zrf_W_DT4_DG5	BBB	BB00	73	0.23	BB00
11	1zrf_W_DG5_DC6	BBw	BB02	63	0.20	BB02
12	1zrf_W_DC6_DG7	NAN	NANT	0	1.05	BB00
13	1zrf_W_DG7_DA8	BB2	BB07	48	0.49	BB07
14	1zrf_W_DA8_DT9	BBw	BB02	57	0.28	BB02
15	1zrf_X_DA-7_DT-8	BBB	BB00	83	0.13	BB00
16	1zrf_X_DA-6_DA-7	BBB	BB00	74	0.24	BB00
17	1zrf_X_DA-5_DA-6	B12	BB04	74	0.23	BB04
18	1zrf_X_DG-4_DA-5	B12	BB04	87	0.20	BB04
19	1zrf_X_DC-3_DG-4	B12	BB04	87	0.27	BB04
20	1zrf_X_DT-2_DC-3	BBB	BB00	92	0.11	BB00
21	1zrf_X_DT-1_DT-2	BBB	BB00	95	0.15	BB00
22	1zrf_X_DT1_DT-1	BBB	BB00	88	0.23	BB00
23	1zrf_X_DT2_DT1	BBB	BB00	58	0.28	BB00
24	1zrf_X_DT3_DT2	BBw	BB03	84	0.25	BB03
25	1zrf_X_DA4_DT3	BBw	BB02	90	0.23	BB02
26	1zrf_X_DC5_DA4	BBB	BB00	73	0.33	BB00
27	1zrf_X_DG6_DC5	BBw	BB02	79	0.27	BB02
28	1zrf_X_DC7_DG6	NAN	NANT	0	0.51	BB04
29	1zrf_X_DT8_DC7	NAN	NANT	0	0.68	BB00
30	1zrf_X_DA9_DT8	BBw	BB02	89	0.17	BB02
31	1zrf_X_DG10_DA9	BBB	BB00	32	0.42	BB00
32	1zrf_X_DA11_DG10	BBw	BB02	40	0.33	BB02
33	1zrf_X_DT12_DA11	BBw	BB02	72	0.24	BB02
34	1zrf_X_DC13_DT12	BBB	BB00	78	0.27	BB00
35	1zrf_Y_DT-7_DT-6	NAN	NANT	0	0.41	BB11
36	1zrf_Y_DT-6_DT-5	BBB	BB00	72	0.26	BB00
37	1zrf_Y_DT-5_DC-4	BBB	BB00	95	0.12	BB00
38	1zrf_Y_DC-4_DG-3	B12	BB04	87	0.27	BB04
39	1zrf_Y_DG-3_DA-2	miB	BB12	71	0.48	BB12
40	1zrf_Y_DA-2_DA-1	NAN	NANT	0	0.49	BB03
41	1zrf_Y_DA-1_DA1	BBB	BB00	85	0.20	BB00
42	1zrf_Y_DA1_DA2	BBB	BB00	87	0.13	BB00
43	1zrf_Y_DA2_DA3	BBB	BB00	92	0.15	BB00
44	1zrf_Y_DA3_DT4	BBB	BB00	86	0.20	BB00
45	1zrf_Y_DT4_DG5	BBB	BB00	82	0.23	BB00
46	1zrf_Y_DG5_DC6	BBw	BB02	75	0.23	BB02
47	1zrf_Y_DC6_DG7	NAN	NANT	0	0.48	BB16
48	1zrf_Y_DG7_DA8	BB2	BB07	20	0.68	BB07
49	1zrf_Y_DA8_DT9	BBw	BB02	78	0.14	BB02
50	1zrf_Z_DA-7_DT-8	NAN	NANT	0	0.63	BB00
51	1zrf_Z_DA-6_DA-7	BBB	BB00	84	0.20	BB00
52	1zrf_Z_DA-5_DA-6	BBB	BB00	77	0.32	BB00
53	1zrf_Z_DG-4_DA-5	B12	BB04	84	0.20	BB04
54	1zrf_Z_DC-3_DG-4	B12	BB04	63	0.35	BB04
55	1zrf_Z_DT-2_DC-3	BBw	BB02	95	0.10	BB02
56	1zrf_Z_DT-1_DT-2	BBB	BB00	81	0.23	BB00
57	1zrf_Z_DT1_DT-1	BBw	BB02	54	0.26	BB02
58	1zrf_Z_DT2_DT1	BBw	BB03	80	0.34	BB03
59	1zrf_Z_DT3_DT2	BBB	BB00	84	0.27	BB00
60	1zrf_Z_DA4_DT3	BBB	BB00	96	0.14	BB00
61	1zrf_Z_DC5_DA4	B12	BB04	70	0.23	BB04
62	1zrf_Z_DG6_DC5	BBw	BB02	62	0.20	BB02
63	1zrf_Z_DC7_DG6	B12	BB04	31	0.56	BB04
64	1zrf_Z_DT8_DC7	BBB	BB00	49	0.44	BB00
65	1zrf_Z_DA9_DT8	BBw	BB02	90	0.18	BB02
66	1zrf_Z_DG10_DA9	BBB	BB00	63	0.29	BB00
67	1zrf_Z_DA11_DG10	BBw	BB02	83	0.22	BB02
68	1zrf_Z_DT12_DA11	BBB	BB00	94	0.16	BB00
69	1zrf_Z_DC13_DT12	BBB	BB00	61	0.32	BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

IC

OPN

Z

N

Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible