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Conformers: ABBIImiBZICOPNSYNN
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4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6G;17C]ICAP38 DNA

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011zre_W_DA-8_DT-7NANNANT00.59 BB02
021zre_W_DT-7_DT-6BB2BB07130.34 BB07
031zre_W_DT-6_DT-5BBBBB00300.37 BB00
041zre_W_DT-5_DC-4BBBBB00540.26 BB00
051zre_W_DC-4_DG-3BBBBB00570.33 BB00
061zre_W_DG-3_DA-2miBBB12640.39 BB12
071zre_W_DA-2_DA-1BBBBB00320.56 BB00
081zre_W_DA-1_DA1BBBBB00340.46 BB00
091zre_W_DA1_DA2BBwBB02760.24 BB02
101zre_W_DA2_DA3BBBBB00550.26 BB00
111zre_W_DA3_DT4BBwBB02650.22 BB02
121zre_W_DT4_DG5BBBBB00350.30 BB00
131zre_W_DG5_DG6NANNANT00.56 BB10
141zre_W_DG6_DG7NANNANT00.46 BB10
151zre_W_DG7_DA8BB2BB07310.27 BB07
161zre_W_DA8_DT9NANNANT00.27 BB02
171zre_X_DA-7_DT-8BBBBB00200.34 BB00
181zre_X_DA-6_DA-7BBBBB00520.28 BB00
191zre_X_DA-5_DA-6BBBBB00550.26 BB00
201zre_X_DG-4_DA-5BBBBB00650.18 BB00
211zre_X_DC-3_DG-4B12BB04330.27 BB04
221zre_X_DT-2_DC-3BBBBB00230.23 BB00
231zre_X_DT-1_DT-2BBBBB00560.22 BB00
241zre_X_DT1_DT-1BBBBB00630.26 BB00
251zre_X_DT2_DT1BBwBB02220.47 BB02
261zre_X_DT3_DT2miBBB13850.22 BB13
271zre_X_DA4_DT3BBwBB02570.18 BB02
281zre_X_DC5_DA4BB2BB07700.32 BB07
291zre_X_DC6_DC5NANNANT00.52 BB08
301zre_X_DC7_DC6NANNANT00.49 BB00
311zre_X_DT8_DC7BBwBB02310.42 BB02
321zre_X_DA9_DT8BBwBB02720.16 BB02
331zre_X_DG10_DA9B12BB04130.28 BB04
341zre_X_DA11_DG10BBwBB02180.50 BB02
351zre_X_DT12_DA11NANNANT00.47 BB08
361zre_X_DC13_DT12BBBBB00490.27 BB00
371zre_Y_DA-8_DT-7BBBBB00650.25 BB00
381zre_Y_DT-7_DT-6BBBBB00670.29 BB00
391zre_Y_DT-6_DT-5BBBBB00170.42 BB00
401zre_Y_DT-5_DC-4BBBBB00480.33 BB00
411zre_Y_DC-4_DG-3B12BB04560.23 BB04
421zre_Y_DG-3_DA-2miBBB12490.56 BB12
431zre_Y_DA-2_DA-1BBwBB03300.42 BB03
441zre_Y_DA-1_DA1BBwBB02680.31 BB02
451zre_Y_DA1_DA2BBBBB00550.31 BB00
461zre_Y_DA2_DA3BBBBB00660.22 BB00
471zre_Y_DA3_DT4BBwBB02760.24 BB02
481zre_Y_DT4_DG5BBBBB00510.42 BB00
491zre_Y_DG5_DG6BBwBB02310.46 BB02
501zre_Y_DG6_DG7B12BB04620.24 BB04
511zre_Y_DG7_DA8BBBBB00660.22 BB00
521zre_Y_DA8_DT9BBBBB00370.32 BB00
531zre_Z_DA-7_DT-8BBBBB00280.25 BB00
541zre_Z_DA-6_DA-7BBBBB00560.23 BB00
551zre_Z_DA-5_DA-6BBwBB02800.15 BB02
561zre_Z_DG-4_DA-5B12BB04580.30 BB04
571zre_Z_DC-3_DG-4B12BB04410.34 BB04
581zre_Z_DT-2_DC-3BBwBB02370.26 BB02
591zre_Z_DT-1_DT-2BBBBB00550.35 BB00
601zre_Z_DT1_DT-1BBwBB02540.32 BB02
611zre_Z_DT2_DT1BBwBB03830.20 BB03
621zre_Z_DT3_DT2BBwBB03780.26 BB03
631zre_Z_DA4_DT3NANNANT00.35 BB02
641zre_Z_DC5_DA4B12BB04330.39 BB04
651zre_Z_DC6_DC5BBwBB02630.34 BB02
661zre_Z_DC7_DC6BBwBB02710.37 BB02
671zre_Z_DT8_DC7BBwBB02890.20 BB02
681zre_Z_DA9_DT8BBwBB02760.18 BB02
691zre_Z_DG10_DA9BBBBB00600.31 BB00
701zre_Z_DA11_DG10BBwBB02240.47 BB02
711zre_Z_DT12_DA11NANNANT00.73 BB08
721zre_Z_DC13_DT12NANNANT00.46 BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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