Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
4 Crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-ICAP38 DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1zrc_W_DA-8_DT-7 | NAN | NANT | 0 | 0.52 |
| 02 | 1zrc_W_DT-7_DT-6 | NAN | NANT | 0 | 0.55 |
| 03 | 1zrc_W_DT-6_DT-5 | BBB | BB00 | 60 | 0.26 |
| 04 | 1zrc_W_DT-5_DC-4 | BBB | BB00 | 10 | 0.37 |
| 05 | 1zrc_W_DC-4_DG-3 | BBB | BB00 | 43 | 0.34 |
| 06 | 1zrc_W_DG-3_DA-2 | miB | BB12 | 59 | 0.51 |
| 07 | 1zrc_W_DA-2_DA-1 | BBB | BB00 | 12 | 0.53 |
| 08 | 1zrc_W_DA-1_DA1 | BBB | BB00 | 41 | 0.36 |
| 09 | 1zrc_W_DA1_DA2 | BBw | BB02 | 70 | 0.18 |
| 10 | 1zrc_W_DA2_DA3 | BBB | BB00 | 52 | 0.26 |
| 11 | 1zrc_W_DA3_DT4 | BBw | BB02 | 80 | 0.15 |
| 12 | 1zrc_W_DT4_DG5 | BBB | BB00 | 61 | 0.37 |
| 13 | 1zrc_W_DG5_DT6 | BBw | BB02 | 18 | 0.34 |
| 14 | 1zrc_W_DT6_DG7 | NAN | NANT | 0 | 0.79 |
| 15 | 1zrc_W_DG7_DA8 | BB2 | BB07 | 24 | 0.42 |
| 16 | 1zrc_W_DA8_DT9 | BBw | BB02 | 46 | 0.23 |
| 17 | 1zrc_X_DA-7_DT-8 | BBB | BB00 | 34 | 0.29 |
| 18 | 1zrc_X_DA-6_DA-7 | BBB | BB00 | 25 | 0.40 |
| 19 | 1zrc_X_DA-5_DA-6 | BBB | BB00 | 64 | 0.34 |
| 20 | 1zrc_X_DG-4_DA-5 | NAN | NANT | 0 | 0.44 |
| 21 | 1zrc_X_DC-3_DG-4 | BBB | BB00 | 23 | 0.45 |
| 22 | 1zrc_X_DT-2_DC-3 | BBB | BB00 | 53 | 0.21 |
| 23 | 1zrc_X_DT-1_DT-2 | BBB | BB00 | 55 | 0.28 |
| 24 | 1zrc_X_DT1_DT-1 | BBB | BB00 | 58 | 0.30 |
| 25 | 1zrc_X_DT2_DT1 | BBw | BB02 | 31 | 0.38 |
| 26 | 1zrc_X_DT3_DT2 | miB | BB13 | 29 | 0.39 |
| 27 | 1zrc_X_DA4_DT3 | BBB | BB00 | 12 | 0.39 |
| 28 | 1zrc_X_DC5_DA4 | B12 | BB04 | 25 | 0.38 |
| 29 | 1zrc_X_DA6_DC5 | BBw | BB02 | 27 | 0.34 |
| 30 | 1zrc_X_DC7_DA6 | NAN | NANT | 0 | 0.53 |
| 31 | 1zrc_X_DT8_DC7 | NAN | NANT | 0 | 0.49 |
| 32 | 1zrc_X_DA9_DT8 | BBw | BB02 | 71 | 0.21 |
| 33 | 1zrc_X_DG10_DA9 | NAN | NANT | 0 | 0.32 |
| 34 | 1zrc_X_DA11_DG10 | NAN | NANT | 0 | 0.35 |
| 35 | 1zrc_X_DT12_DA11 | NAN | NANT | 0 | 0.48 |
| 36 | 1zrc_X_DC13_DT12 | BBB | BB00 | 53 | 0.31 |
| 37 | 1zrc_Y_DA-8_DT-7 | BBB | BB00 | 18 | 0.38 |
| 38 | 1zrc_Y_DT-7_DT-6 | BBB | BB00 | 38 | 0.47 |
| 39 | 1zrc_Y_DT-6_DT-5 | BBB | BB00 | 66 | 0.27 |
| 40 | 1zrc_Y_DT-5_DC-4 | NAN | NANT | 0 | 0.42 |
| 41 | 1zrc_Y_DC-4_DG-3 | B12 | BB04 | 41 | 0.28 |
| 42 | 1zrc_Y_DG-3_DA-2 | NAN | NANT | 0 | 0.49 |
| 43 | 1zrc_Y_DA-2_DA-1 | BBw | BB03 | 51 | 0.46 |
| 44 | 1zrc_Y_DA-1_DA1 | BBB | BB00 | 74 | 0.26 |
| 45 | 1zrc_Y_DA1_DA2 | BBB | BB00 | 53 | 0.28 |
| 46 | 1zrc_Y_DA2_DA3 | BBB | BB00 | 57 | 0.32 |
| 47 | 1zrc_Y_DA3_DT4 | BBw | BB02 | 52 | 0.26 |
| 48 | 1zrc_Y_DT4_DG5 | BBB | BB00 | 50 | 0.33 |
| 49 | 1zrc_Y_DG5_DT6 | NAN | NANT | 0 | 0.33 |
| 50 | 1zrc_Y_DT6_DG7 | BBB | BB00 | 69 | 0.33 |
| 51 | 1zrc_Y_DG7_DA8 | BBB | BB00 | 60 | 0.32 |
| 52 | 1zrc_Y_DA8_DT9 | BBB | BB00 | 32 | 0.29 |
| 53 | 1zrc_Z_DA-7_DT-8 | BBB | BB00 | 20 | 0.36 |
| 54 | 1zrc_Z_DA-6_DA-7 | BBB | BB00 | 46 | 0.38 |
| 55 | 1zrc_Z_DA-5_DA-6 | BBB | BB00 | 70 | 0.17 |
| 56 | 1zrc_Z_DG-4_DA-5 | B12 | BB04 | 55 | 0.21 |
| 57 | 1zrc_Z_DC-3_DG-4 | B12 | BB04 | 50 | 0.33 |
| 58 | 1zrc_Z_DT-2_DC-3 | BBw | BB02 | 71 | 0.22 |
| 59 | 1zrc_Z_DT-1_DT-2 | BBB | BB00 | 47 | 0.33 |
| 60 | 1zrc_Z_DT1_DT-1 | BBw | BB02 | 70 | 0.27 |
| 61 | 1zrc_Z_DT2_DT1 | NAN | NANT | 0 | 0.35 |
| 62 | 1zrc_Z_DT3_DT2 | miB | BB12 | 25 | 0.42 |
| 63 | 1zrc_Z_DA4_DT3 | BBB | BB00 | 52 | 0.34 |
| 64 | 1zrc_Z_DC5_DA4 | BBB | BB00 | 55 | 0.39 |
| 65 | 1zrc_Z_DA6_DC5 | BBw | BB02 | 41 | 0.39 |
| 66 | 1zrc_Z_DC7_DA6 | BBB | BB00 | 72 | 0.28 |
| 67 | 1zrc_Z_DT8_DC7 | BBB | BB00 | 24 | 0.18 |
| 68 | 1zrc_Z_DA9_DT8 | BBw | BB02 | 87 | 0.17 |
| 69 | 1zrc_Z_DG10_DA9 | BBB | BB00 | 62 | 0.33 |
| 70 | 1zrc_Z_DA11_DG10 | BBw | BB02 | 70 | 0.36 |
| 71 | 1zrc_Z_DT12_DA11 | NAN | NANT | 0 | 0.72 |
| 72 | 1zrc_Z_DC13_DT12 | NAN | NANT | 0 | 0.43 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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