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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR)

Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011zqn_T_DC1_DA2NANNANT00.55 BB00
021zqn_T_DA2_DT3BBBBB00440.25 BB00
031zqn_T_DT3_DT4BBBBB0080.34 BB00
041zqn_T_DT4_DA5BBBBB00230.33 BB00
051zqn_T_DA5_DG6B-ABA05260.38 BA05
061zqn_T_DG6_DA7NANNANT00.43 BB10
071zqn_P_DT1_DC2BBBBB01210.37 BB01
081zqn_P_DC2_DT3BBBBB00650.22 BB00
091zqn_P_DT3_DA4BBBBB0090.34 BB00
101zqn_P_DA4_DA5B-ABA05380.22 BA05
111zqn_P_DA5_DT6NANNANT00.30 BB02
121zqn_P_DT6_DG7NANNANT00.65 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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