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Conformers: ABBIImiBZICOPNSYNN
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Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011zjw_B_G902_G903AAAAA00600.26 AA00
021zjw_B_G903_G904AAAAA00750.23 AA00
031zjw_B_G904_G905AAwAA01920.17 AA01
041zjw_B_G905_U906AAAAA00760.18 AA00
051zjw_B_U906_A907NANNANT00.46 AA01
061zjw_B_A907_U908NANNANT00.44 OP11
071zjw_B_U908_C909NANNANT00.73 AA07
081zjw_B_C909_G910NANNANT01.12 OP07
091zjw_B_G910_C911AAAAA00410.31 AA00
101zjw_B_C911_C912AAwAA01960.17 AA01
111zjw_B_C912_A913AAAAA00290.56 AA00
121zjw_B_A913_A914AAwAA01220.58 AA01
131zjw_B_A914_G915AAAAA08500.61 AA08
141zjw_B_G915_C916NANNANT02.06 ZZ02
151zjw_B_C916_G918NANNANT01.63 OP13
161zjw_B_G918_G919NANNANT00.85 AA07
171zjw_B_G919_U920NANNANT00.86 AA02
181zjw_B_U920_A921NANNANT02.04 OP21
191zjw_B_A921_A922NANNANT00.75 IC07
201zjw_B_A922_G923AAAAA08750.41 AA08
211zjw_B_G923_G924AAAAA00850.15 AA00
221zjw_B_G924_C925AAAAA00930.13 AA00
231zjw_B_C925_A926AAAAA00740.37 AA00
241zjw_B_A926_C927AAAAA00790.31 AA00
251zjw_B_C927_C928AAAAA00660.23 AA00
261zjw_B_C928_G929AAwAA01870.16 AA01
271zjw_B_G929_G930AAAAA08820.19 AA08
281zjw_B_G930_A931AAAAA00720.22 AA00
291zjw_B_A931_U932AAwAA01880.17 AA01
301zjw_B_U932_U933AAAAA08780.36 AA08
311zjw_B_U933_C934OPNOP29250.73 OP29
321zjw_B_C934_U935NANNANT01.47 OP30
331zjw_B_U935_G936NANNANT01.38 OP17
341zjw_B_G936_A937NANNANT00.96 OP01
351zjw_B_A937_U938AAAAA00400.42 AA00
361zjw_B_U938_U939AAAAA00200.43 AA00
371zjw_B_U939_C940AAAAA08690.36 AA08
381zjw_B_C940_C941AAwAA11570.42 AA11
391zjw_B_C941_G942AAAAA00650.29 AA00
401zjw_B_G942_G943AAAAA00770.21 AA00
411zjw_B_G943_C944AAAAA00820.20 AA00
421zjw_B_C944_A945NANNANT01.30 AA07
431zjw_B_A945_U946NANNANT01.42 OP31
441zjw_B_U946_U947NANNANT00.82 OP01
451zjw_B_U947_C948NANNANT00.78 AA03
461zjw_B_C948_C949NANNANT01.60 OP06
471zjw_B_C949_G950AAAAA00760.21 AA00
481zjw_B_G950_A951AAAAA00910.11 AA00
491zjw_B_A951_G952AAwAA01930.23 AA01
501zjw_B_G952_G953AAAAA00750.30 AA00
511zjw_B_G953_U954AAAAA00760.19 AA00
521zjw_B_U954_U955AAAAA00900.26 AA00
531zjw_B_U955_C956OPNOP04910.18 OP04
541zjw_B_C956_G957AAAAA08850.28 AA08
551zjw_B_G957_A958NANNANT00.52 IC01
561zjw_B_A958_A959NANNANT00.49 OP04
571zjw_B_A959_U960AAwAA05290.30 AA05
581zjw_B_U960_C961NANNANT00.50 OP12
591zjw_B_C961_C962AAAAA00780.17 AA00
601zjw_B_C962_U963AAAAA00130.31 AA00
611zjw_B_U963_C964AAAAA00600.21 AA00
621zjw_B_C964_G965AAwAA01780.11 AA01
631zjw_B_G965_U966AAAAA08820.19 AA08
641zjw_B_U966_A967AAAAA00860.11 AA00
651zjw_B_A967_C968AAAAA00920.12 AA00
661zjw_B_C968_C969AAAAA00900.16 AA00
671zjw_B_C969_C970AAAAA00920.18 AA00
681zjw_B_C970_C971AAAAA00910.16 AA00
691zjw_B_C971_A972NANNANT00.71 AA12
701zjw_B_A972_G973NANNANT00.66 OP31
711zjw_B_G973_C974NANNANT00.56 OP14
721zjw_B_C974_C975NANNANT00.97 OP31
731zjw_B_C975_A976AAAAA00490.42 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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