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Conformers: ABBIImiBZICOPNSYNN
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Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011zjn_T_DC1_DC2BB2BB07690.19 BB07
021zjn_T_DC2_DG3BBBBB00530.16 BB00
031zjn_T_DG3_DA4B12BB04430.12 BB04
041zjn_T_DA4_DC5BBBBB00290.36 BB00
051zjn_T_DC5_DC6NANNANT01.66 OP05
061zjn_T_DC6_DA7BBBBB00300.40 BB00
071zjn_T_DA7_DC8BBBBB00610.24 BB00
081zjn_T_DC8_DG9B12BB04570.36 BB04
091zjn_T_DG9_DC10BBBBB00830.17 BB00
101zjn_T_DC10_DA11BBBBB00780.24 BB00
111zjn_T_DA11_DT12BBBBB01370.19 BB01
121zjn_T_DT12_DC13A-BAB03530.29 AB03
131zjn_T_DC13_DA14B12BB04740.27 BB04
141zjn_T_DA14_DG15B-ABA05760.19 BA05
151zjn_T_DG15_DC16B-ABA05770.21 BA05
161zjn_P_DG1_DC2A-BAB04400.26 AB04
171zjn_P_DC2_DT3BBBBB00770.20 BB00
181zjn_P_DT3_DG4BBBBB00650.19 BB00
191zjn_P_DG4_DA5BBBBB00670.24 BB00
201zjn_P_DA5_DT6BBBBB01750.21 BB01
211zjn_P_DT6_DG7B-ABA05640.16 BA05
221zjn_P_DG7_DC8B-ABA05430.23 BA05
231zjn_P_DC8_DG9A-BAB01550.30 AB01
241zjn_P_DG9_DA10NANNANT01.03 BB2S
251zjn_D_DG1_DT2BBwBB02850.24 BB02
261zjn_D_DT2_DC3BBBBB00610.39 BB00
271zjn_D_DC3_DG4B12BB04160.28 BB04
281zjn_D_DG4_DG5B12BB04760.26 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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