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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
GCAA RNA TETRALOOP, NMR, 10 STRUCTURES

Results of the assignment of 110 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011zih-m10_A_G1_G2AAAAA00710.23 AA00
0021zih-m1_A_G1_G2AAAAA00660.27 AA00
0031zih-m2_A_G1_G2AAAAA00620.29 AA00
0041zih-m3_A_G1_G2AAAAA00680.27 AA00
0051zih-m4_A_G1_G2AAAAA00530.36 AA00
0061zih-m5_A_G1_G2AAAAA00620.31 AA00
0071zih-m6_A_G1_G2AAAAA00550.33 AA00
0081zih-m7_A_G1_G2AAAAA00500.37 AA00
0091zih-m8_A_G1_G2AAAAA00530.36 AA00
0101zih-m9_A_G1_G2AAAAA00600.34 AA00
0111zih-m10_A_G2_G3AAAAA00480.29 AA00
0121zih-m1_A_G2_G3AAAAA00690.18 AA00
0131zih-m2_A_G2_G3AAAAA00430.29 AA00
0141zih-m3_A_G2_G3AAAAA00680.20 AA00
0151zih-m4_A_G2_G3AAAAA00490.26 AA00
0161zih-m5_A_G2_G3AAAAA00510.25 AA00
0171zih-m6_A_G2_G3AAAAA00720.19 AA00
0181zih-m7_A_G2_G3AAAAA00760.19 AA00
0191zih-m8_A_G2_G3AAAAA00400.29 AA00
0201zih-m9_A_G2_G3AAAAA00580.23 AA00
0211zih-m10_A_G3_C4AAAAA00750.16 AA00
0221zih-m1_A_G3_C4AAAAA00730.16 AA00
0231zih-m2_A_G3_C4AAAAA00700.14 AA00
0241zih-m3_A_G3_C4AAAAA00670.15 AA00
0251zih-m4_A_G3_C4AAwAA01770.22 AA01
0261zih-m5_A_G3_C4AAwAA01810.19 AA01
0271zih-m6_A_G3_C4AAwAA01790.20 AA01
0281zih-m7_A_G3_C4AAwAA01780.21 AA01
0291zih-m8_A_G3_C4AAwAA01810.19 AA01
0301zih-m9_A_G3_C4AAwAA01790.20 AA01
0311zih-m10_A_C4_G5AAAAA00570.33 AA00
0321zih-m1_A_C4_G5AAAAA00470.35 AA00
0331zih-m2_A_C4_G5AAAAA00590.32 AA00
0341zih-m3_A_C4_G5AAAAA00590.31 AA00
0351zih-m4_A_C4_G5AAAAA00530.34 AA00
0361zih-m5_A_C4_G5AAAAA00470.35 AA00
0371zih-m6_A_C4_G5AAAAA00550.37 AA00
0381zih-m7_A_C4_G5AAAAA00600.34 AA00
0391zih-m8_A_C4_G5AAAAA00560.34 AA00
0401zih-m9_A_C4_G5AAAAA00540.37 AA00
0411zih-m10_A_G5_C6OPNOP04180.46 OP04
0421zih-m1_A_G5_C6OPNOP04150.51 OP04
0431zih-m2_A_G5_C6NANNANT00.98 OP29
0441zih-m3_A_G5_C6OPNOP04190.44 OP04
0451zih-m4_A_G5_C6OPNOP04180.44 OP04
0461zih-m5_A_G5_C6OPNOP04150.45 OP04
0471zih-m6_A_G5_C6NANNANT01.42 OP09
0481zih-m7_A_G5_C6NANNANT00.89 OP05
0491zih-m8_A_G5_C6NANNANT01.13 OP09
0501zih-m9_A_G5_C6OPNOP04180.45 OP04
0511zih-m10_A_C6_A7AAAAA08260.54 AA08
0521zih-m1_A_C6_A7AAAAA08180.56 AA08
0531zih-m2_A_C6_A7OPNOP12300.59 OP12
0541zih-m3_A_C6_A7AAAAA08260.53 AA08
0551zih-m4_A_C6_A7AAAAA08270.53 AA08
0561zih-m5_A_C6_A7AAAAA08260.54 AA08
0571zih-m6_A_C6_A7OPNOP12210.57 OP12
0581zih-m7_A_C6_A7NANNANT00.89 AA00
0591zih-m8_A_C6_A7SYNAAS1330.34 AAS1
0601zih-m9_A_C6_A7AAAAA08200.53 AA08
0611zih-m10_A_A7_A8AAAAA00610.24 AA00
0621zih-m1_A_A7_A8AAwAA01540.31 AA01
0631zih-m2_A_A7_A8AAAAA00610.24 AA00
0641zih-m3_A_A7_A8AAAAA00580.24 AA00
0651zih-m4_A_A7_A8AAAAA00620.21 AA00
0661zih-m5_A_A7_A8AAAAA00560.21 AA00
0671zih-m6_A_A7_A8AAAAA00420.32 AA00
0681zih-m7_A_A7_A8AAwAA01520.31 AA01
0691zih-m8_A_A7_A8AAAAA00400.27 AA00
0701zih-m9_A_A7_A8AAwAA01510.33 AA01
0711zih-m10_A_A8_G9NANNANT00.97 AA08
0721zih-m1_A_A8_G9NANNANT01.01 AA08
0731zih-m2_A_A8_G9NANNANT00.91 AA08
0741zih-m3_A_A8_G9NANNANT00.93 AA08
0751zih-m4_A_A8_G9NANNANT00.99 AA08
0761zih-m5_A_A8_G9NANNANT00.98 AA08
0771zih-m6_A_A8_G9NANNANT00.88 AA08
0781zih-m7_A_A8_G9NANNANT01.02 AA08
0791zih-m8_A_A8_G9NANNANT00.90 AA08
0801zih-m9_A_A8_G9NANNANT01.03 AA08
0811zih-m10_A_G9_C10AAAAA00340.25 AA00
0821zih-m1_A_G9_C10AAAAA00740.17 AA00
0831zih-m2_A_G9_C10AAAAA00350.24 AA00
0841zih-m3_A_G9_C10AAAAA00650.18 AA00
0851zih-m4_A_G9_C10AAAAA00550.23 AA00
0861zih-m5_A_G9_C10AAAAA00360.27 AA00
0871zih-m6_A_G9_C10AAAAA00600.24 AA00
0881zih-m7_A_G9_C10AAAAA00700.20 AA00
0891zih-m8_A_G9_C10AAAAA00510.23 AA00
0901zih-m9_A_G9_C10AAAAA00450.23 AA00
0911zih-m10_A_C10_C11AAAAA00350.37 AA00
0921zih-m1_A_C10_C11AAAAA00420.37 AA00
0931zih-m2_A_C10_C11AAAAA00280.40 AA00
0941zih-m3_A_C10_C11AAAAA00350.37 AA00
0951zih-m4_A_C10_C11AAAAA00530.34 AA00
0961zih-m5_A_C10_C11AAAAA00420.36 AA00
0971zih-m6_A_C10_C11AAAAA00550.35 AA00
0981zih-m7_A_C10_C11AAAAA00540.34 AA00
0991zih-m8_A_C10_C11AAAAA00490.36 AA00
1001zih-m9_A_C10_C11AAAAA00460.36 AA00
1011zih-m10_A_C11_U12AAAAA00520.39 AA00
1021zih-m1_A_C11_U12AAAAA00500.38 AA00
1031zih-m2_A_C11_U12AAAAA00560.37 AA00
1041zih-m3_A_C11_U12AAAAA00410.39 AA00
1051zih-m4_A_C11_U12AAAAA00360.39 AA00
1061zih-m5_A_C11_U12AAAAA00540.37 AA00
1071zih-m6_A_C11_U12AAAAA00410.39 AA00
1081zih-m7_A_C11_U12AAAAA00310.43 AA00
1091zih-m8_A_C11_U12AAAAA00510.37 AA00
1101zih-m9_A_C11_U12AAAAA00410.40 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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