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Conformers: ABBIImiBZICOPNSYNN
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GAGA RNA TETRALOOP, NMR, 10 STRUCTURES

Results of the assignment of 110 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011zig-m10_A_G1_G2AAAAA00700.27 AA00
0021zig-m1_A_G1_G2AAAAA00500.36 AA00
0031zig-m2_A_G1_G2AAAAA00670.27 AA00
0041zig-m3_A_G1_G2AAAAA00680.28 AA00
0051zig-m4_A_G1_G2AAAAA00550.33 AA00
0061zig-m5_A_G1_G2AAAAA00640.28 AA00
0071zig-m6_A_G1_G2AAAAA00480.39 AA00
0081zig-m7_A_G1_G2AAwAA01630.27 AA01
0091zig-m8_A_G1_G2AAAAA00540.32 AA00
0101zig-m9_A_G1_G2AAAAA00610.30 AA00
0111zig-m10_A_G2_G3AAAAA00800.18 AA00
0121zig-m1_A_G2_G3AAwAA01280.56 AA01
0131zig-m2_A_G2_G3AAAAA00690.26 AA00
0141zig-m3_A_G2_G3AAAAA00730.23 AA00
0151zig-m4_A_G2_G3AAAAA04480.44 AA04
0161zig-m5_A_G2_G3AAAAA00660.21 AA00
0171zig-m6_A_G2_G3AAAAA04420.46 AA04
0181zig-m7_A_G2_G3AAuAA12250.50 AA12
0191zig-m8_A_G2_G3AAAAA00500.20 AA00
0201zig-m9_A_G2_G3AAAAA00190.32 AA00
0211zig-m10_A_G3_C4AAwAA01770.18 AA01
0221zig-m1_A_G3_C4AAAAA00500.33 AA00
0231zig-m2_A_G3_C4AAAAA00650.32 AA00
0241zig-m3_A_G3_C4AAwAA01820.20 AA01
0251zig-m4_A_G3_C4AAwAA01800.20 AA01
0261zig-m5_A_G3_C4AAAAA00670.25 AA00
0271zig-m6_A_G3_C4AAwAA01810.18 AA01
0281zig-m7_A_G3_C4AAwAA01700.27 AA01
0291zig-m8_A_G3_C4AAwAA01860.16 AA01
0301zig-m9_A_G3_C4AAwAA01810.22 AA01
0311zig-m10_A_C4_G5AAAAA00620.32 AA00
0321zig-m1_A_C4_G5AAAAA00760.29 AA00
0331zig-m2_A_C4_G5AAAAA00770.23 AA00
0341zig-m3_A_C4_G5AAAAA00620.26 AA00
0351zig-m4_A_C4_G5AAAAA00610.27 AA00
0361zig-m5_A_C4_G5AAAAA00760.23 AA00
0371zig-m6_A_C4_G5AAAAA00580.30 AA00
0381zig-m7_A_C4_G5AAAAA00610.24 AA00
0391zig-m8_A_C4_G5AAAAA00340.32 AA00
0401zig-m9_A_C4_G5AAAAA00680.22 AA00
0411zig-m10_A_G5_A6NANNANT00.71 OP04
0421zig-m1_A_G5_A6OPNOP03280.52 OP03
0431zig-m2_A_G5_A6NANNANT00.61 OP03
0441zig-m3_A_G5_A6NANNANT01.83 OP17
0451zig-m4_A_G5_A6NANNANT00.66 OP04
0461zig-m5_A_G5_A6NANNANT00.63 OP04
0471zig-m6_A_G5_A6NANNANT00.66 OP04
0481zig-m7_A_G5_A6NANNANT01.82 OP17
0491zig-m8_A_G5_A6NANNANT00.74 OP04
0501zig-m9_A_G5_A6NANNANT00.51 OP04
0511zig-m10_A_A6_G7NANNANT00.69 AB05
0521zig-m1_A_A6_G7NANNANT00.76 AB05
0531zig-m2_A_A6_G7NANNANT00.91 BB17
0541zig-m3_A_A6_G7NANNANT00.54 BB16
0551zig-m4_A_A6_G7NANNANT00.69 AB05
0561zig-m5_A_A6_G7NANNANT00.55 BB16
0571zig-m6_A_A6_G7NANNANT00.60 AB05
0581zig-m7_A_A6_G7NANNANT00.85 AB05
0591zig-m8_A_A6_G7NANNANT00.33 BB16
0601zig-m9_A_A6_G7NANNANT00.53 AB04
0611zig-m10_A_G7_A8NANNANT00.32 AA02
0621zig-m1_A_G7_A8NANNANT00.71 BB01
0631zig-m2_A_G7_A8AAAAA02640.35 AA02
0641zig-m3_A_G7_A8AAAAA02500.29 AA02
0651zig-m4_A_G7_A8NANNANT00.32 AA02
0661zig-m5_A_G7_A8NANNANT00.32 AA02
0671zig-m6_A_G7_A8NANNANT00.32 AA02
0681zig-m7_A_G7_A8AAAAA02190.32 AA02
0691zig-m8_A_G7_A8AAAAA02440.28 AA02
0701zig-m9_A_G7_A8AAAAA02290.30 AA02
0711zig-m10_A_A8_G9NANNANT00.51 AA05
0721zig-m1_A_A8_G9NANNANT00.93 BB13
0731zig-m2_A_A8_G9NANNANT00.48 AA05
0741zig-m3_A_A8_G9NANNANT01.07 BB13
0751zig-m4_A_A8_G9NANNANT01.04 BB13
0761zig-m5_A_A8_G9NANNANT00.48 AA05
0771zig-m6_A_A8_G9NANNANT00.48 AA05
0781zig-m7_A_A8_G9NANNANT00.49 AA05
0791zig-m8_A_A8_G9NANNANT00.50 AA05
0801zig-m9_A_A8_G9NANNANT01.26 BB13
0811zig-m10_A_G9_C10AAAAA00830.26 AA00
0821zig-m1_A_G9_C10AAAAA00380.44 AA00
0831zig-m2_A_G9_C10AAAAA00630.34 AA00
0841zig-m3_A_G9_C10AAAAA00540.36 AA00
0851zig-m4_A_G9_C10AAAAA00540.37 AA00
0861zig-m5_A_G9_C10AAAAA00680.34 AA00
0871zig-m6_A_G9_C10AAAAA00550.35 AA00
0881zig-m7_A_G9_C10AAAAA00410.37 AA00
0891zig-m8_A_G9_C10AAAAA00780.28 AA00
0901zig-m9_A_G9_C10NANNANT00.63 BA05
0911zig-m10_A_C10_C11AAAAA00730.34 AA00
0921zig-m1_A_C10_C11AAwAA01890.15 AA01
0931zig-m2_A_C10_C11AAAAA00820.32 AA00
0941zig-m3_A_C10_C11AAAAA00830.31 AA00
0951zig-m4_A_C10_C11AAAAA00790.34 AA00
0961zig-m5_A_C10_C11AAAAA00570.35 AA00
0971zig-m6_A_C10_C11AAwAA01780.17 AA01
0981zig-m7_A_C10_C11AAAAA00790.35 AA00
0991zig-m8_A_C10_C11AAAAA00780.37 AA00
1001zig-m9_A_C10_C11AAAAA00440.39 AA00
1011zig-m10_A_C11_U12AAAAA00390.32 AA00
1021zig-m1_A_C11_U12AAAAA00630.30 AA00
1031zig-m2_A_C11_U12AAAAA00510.28 AA00
1041zig-m3_A_C11_U12AAAAA00520.27 AA00
1051zig-m4_A_C11_U12AAAAA00600.27 AA00
1061zig-m5_A_C11_U12AAAAA00410.32 AA00
1071zig-m6_A_C11_U12AAAAA00790.23 AA00
1081zig-m7_A_C11_U12AAAAA00700.25 AA00
1091zig-m8_A_C11_U12AAAAA00450.32 AA00
1101zig-m9_A_C11_U12AAAAA00350.34 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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