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Conformers: ABBIImiBZICOPNSYNN
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GAAA RNA TETRALOOP, NMR, 10 STRUCTURES

Results of the assignment of 110 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011zif-m10_A_G1_G2AAAAA00700.27 AA00
0021zif-m1_A_G1_G2AAAAA00130.35 AA00
0031zif-m2_A_G1_G2AAAAA00680.28 AA00
0041zif-m3_A_G1_G2AAAAA00690.26 AA00
0051zif-m4_A_G1_G2AAAAA00640.37 AA00
0061zif-m5_A_G1_G2AAAAA00440.52 AA00
0071zif-m6_A_G1_G2AAAAA00690.31 AA00
0081zif-m7_A_G1_G2AAAAA00650.23 AA00
0091zif-m8_A_G1_G2AAAAA00730.35 AA00
0101zif-m9_A_G1_G2AAAAA00590.25 AA00
0111zif-m10_A_G2_G3AAAAA04440.45 AA04
0121zif-m1_A_G2_G3AAAAA00300.28 AA00
0131zif-m2_A_G2_G3AAAAA04460.45 AA04
0141zif-m3_A_G2_G3AAAAA04390.48 AA04
0151zif-m4_A_G2_G3AAuAA12170.40 AA12
0161zif-m5_A_G2_G3AAAAA00220.38 AA00
0171zif-m6_A_G2_G3AAAAA00230.33 AA00
0181zif-m7_A_G2_G3AAAAA04480.45 AA04
0191zif-m8_A_G2_G3AAAAA00190.37 AA00
0201zif-m9_A_G2_G3AAAAA04470.45 AA04
0211zif-m10_A_G3_C4AAwAA06710.20 AA06
0221zif-m1_A_G3_C4AAwAA01480.31 AA01
0231zif-m2_A_G3_C4AAwAA06750.19 AA06
0241zif-m3_A_G3_C4AAwAA01300.30 AA01
0251zif-m4_A_G3_C4AAwAA01330.34 AA01
0261zif-m5_A_G3_C4AAwAA01450.33 AA01
0271zif-m6_A_G3_C4AAAAA00740.17 AA00
0281zif-m7_A_G3_C4AAAAA00360.25 AA00
0291zif-m8_A_G3_C4AAwAA01430.32 AA01
0301zif-m9_A_G3_C4AAwAA06670.20 AA06
0311zif-m10_A_C4_G5NANNANT01.00 AA04
0321zif-m1_A_C4_G5NANNANT01.04 AA04
0331zif-m2_A_C4_G5NANNANT01.04 AA04
0341zif-m3_A_C4_G5AAAAA04230.65 AA04
0351zif-m4_A_C4_G5AAAAA08190.54 AA08
0361zif-m5_A_C4_G5AAAAA08150.56 AA08
0371zif-m6_A_C4_G5AAAAA00390.40 AA00
0381zif-m7_A_C4_G5AAAAA04180.53 AA04
0391zif-m8_A_C4_G5AAAAA08150.55 AA08
0401zif-m9_A_C4_G5NANNANT01.04 AA04
0411zif-m10_A_G5_A6NANNANT00.45 OP04
0421zif-m1_A_G5_A6OPNOP04220.20 OP04
0431zif-m2_A_G5_A6OPNOP04290.23 OP04
0441zif-m3_A_G5_A6NANNANT00.72 OP04
0451zif-m4_A_G5_A6NANNANT00.43 OP04
0461zif-m5_A_G5_A6NANNANT01.73 OP17
0471zif-m6_A_G5_A6NANNANT01.74 OP17
0481zif-m7_A_G5_A6NANNANT00.46 OP04
0491zif-m8_A_G5_A6NANNANT00.52 OP04
0501zif-m9_A_G5_A6OPNOP04260.23 OP04
0511zif-m10_A_A6_A7AAwAA06530.57 AA06
0521zif-m1_A_A6_A7AAwAA01160.51 AA01
0531zif-m2_A_A6_A7AAAAA00240.45 AA00
0541zif-m3_A_A6_A7NANNANT00.69 AA10
0551zif-m4_A_A6_A7AAwAA05200.44 AA05
0561zif-m5_A_A6_A7AAwAA05300.51 AA05
0571zif-m6_A_A6_A7AAwAA05340.50 AA05
0581zif-m7_A_A6_A7AAwAA0690.60 AA06
0591zif-m8_A_A6_A7AAwAA01480.36 AA01
0601zif-m9_A_A6_A7AAAAA00150.47 AA00
0611zif-m10_A_A7_A8AAwAA05470.57 AA05
0621zif-m1_A_A7_A8AAwAA01150.45 AA01
0631zif-m2_A_A7_A8AAwAA01590.30 AA01
0641zif-m3_A_A7_A8A-BAB05330.55 AB05
0651zif-m4_A_A7_A8AAAAA00410.36 AA00
0661zif-m5_A_A7_A8AAAAA00190.54 AA00
0671zif-m6_A_A7_A8AAAAA08160.54 AA08
0681zif-m7_A_A7_A8AAwAA01260.39 AA01
0691zif-m8_A_A7_A8AAAAA04410.59 AA04
0701zif-m9_A_A7_A8AAwAA01640.28 AA01
0711zif-m10_A_A8_G9NANNANT00.91 AA00
0721zif-m1_A_A8_G9NANNANT00.92 AA00
0731zif-m2_A_A8_G9NANNANT00.88 AA00
0741zif-m3_A_A8_G9NANNANT00.81 BA01
0751zif-m4_A_A8_G9AAAAA08110.72 AA08
0761zif-m5_A_A8_G9AAAAA0890.75 AA08
0771zif-m6_A_A8_G9NANNANT00.82 AA00
0781zif-m7_A_A8_G9NANNANT00.96 AA00
0791zif-m8_A_A8_G9AAAAA0890.74 AA08
0801zif-m9_A_A8_G9NANNANT00.85 AA00
0811zif-m10_A_G9_C10AAwAA01610.32 AA01
0821zif-m1_A_G9_C10AAwAA01690.30 AA01
0831zif-m2_A_G9_C10AAAAA00680.26 AA00
0841zif-m3_A_G9_C10AAAAA00580.30 AA00
0851zif-m4_A_G9_C10AAAAA00430.33 AA00
0861zif-m5_A_G9_C10AAAAA00430.37 AA00
0871zif-m6_A_G9_C10AAAAA00710.16 AA00
0881zif-m7_A_G9_C10AAwAA01690.30 AA01
0891zif-m8_A_G9_C10AAAAA00340.37 AA00
0901zif-m9_A_G9_C10AAAAA00590.28 AA00
0911zif-m10_A_C10_C11AAAAA00570.36 AA00
0921zif-m1_A_C10_C11AAAAA00490.38 AA00
0931zif-m2_A_C10_C11AAAAA00500.38 AA00
0941zif-m3_A_C10_C11AAAAA00450.38 AA00
0951zif-m4_A_C10_C11AAAAA00310.42 AA00
0961zif-m5_A_C10_C11AAAAA00530.40 AA00
0971zif-m6_A_C10_C11AAAAA00370.38 AA00
0981zif-m7_A_C10_C11AAAAA00520.38 AA00
0991zif-m8_A_C10_C11AAAAA00360.40 AA00
1001zif-m9_A_C10_C11AAAAA00350.39 AA00
1011zif-m10_A_C11_U12AAAAA00690.32 AA00
1021zif-m1_A_C11_U12AAAAA00440.42 AA00
1031zif-m2_A_C11_U12AAAAA00610.37 AA00
1041zif-m3_A_C11_U12AAAAA00660.35 AA00
1051zif-m4_A_C11_U12AAAAA00640.29 AA00
1061zif-m5_A_C11_U12AAAAA00190.27 AA00
1071zif-m6_A_C11_U12AAAAA00680.34 AA00
1081zif-m7_A_C11_U12AAAAA00670.34 AA00
1091zif-m8_A_C11_U12AAAAA00670.34 AA00
1101zif-m9_A_C11_U12AAAAA00580.38 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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