Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
B-DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1zew_A_DC1_DC2 | BBw | BB16 | 87 | 0.14 |
| 02 | 1zew_A_DC2_DT3 | BB2 | BB07 | 22 | 0.47 |
| 03 | 1zew_A_DT3_DC4 | BBB | BB00 | 37 | 0.47 |
| 04 | 1zew_A_DC4_DT5 | B12 | BB04 | 73 | 0.23 |
| 05 | 1zew_A_DT5_DA6 | BB2 | BB07 | 62 | 0.33 |
| 06 | 1zew_A_DA6_DG7 | BBB | BB00 | 74 | 0.24 |
| 07 | 1zew_A_DG7_DA8 | BB2 | BB07 | 89 | 0.18 |
| 08 | 1zew_A_DA8_DG9 | B12 | BB04 | 50 | 0.36 |
| 09 | 1zew_A_DG9_DG10 | BBB | BB00 | 55 | 0.42 |
| 10 | 1zew_B_DC11_DC12 | NAN | NANT | 0 | 0.78 |
| 11 | 1zew_B_DC12_DT13 | B12 | BB04 | 55 | 0.47 |
| 12 | 1zew_B_DT13_DC14 | BBB | BB00 | 84 | 0.27 |
| 13 | 1zew_B_DC14_DT15 | BBB | BB00 | 80 | 0.22 |
| 14 | 1zew_B_DT15_DA16 | BB2 | BB07 | 63 | 0.29 |
| 15 | 1zew_B_DA16_DG17 | NAN | NANT | 0 | 0.37 |
| 16 | 1zew_B_DG17_DA18 | B12 | BB04 | 20 | 0.56 |
| 17 | 1zew_B_DA18_DG19 | BBw | BB03 | 42 | 0.28 |
| 18 | 1zew_B_DG19_DG20 | BB2 | BB07 | 50 | 0.44 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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