Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Conformational change of pseudouridine 55 synthase upon its association with RNA substrate
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ze2_C_G1_G2 | SYN | AAS1 | 79 | 0.25 |
| 02 | 1ze2_C_G2_C3 | AAA | AA00 | 84 | 0.14 |
| 03 | 1ze2_C_C3_C4 | AAw | AA01 | 76 | 0.30 |
| 04 | 1ze2_C_C4_A5 | AAA | AA08 | 69 | 0.21 |
| 05 | 1ze2_C_A5_C6 | AAA | AA00 | 90 | 0.17 |
| 06 | 1ze2_C_C6_G7 | AAw | AA06 | 82 | 0.22 |
| 07 | 1ze2_C_G7_G8 | AAA | AA00 | 65 | 0.31 |
| 08 | 1ze2_C_G8_U9 | A-B | AB01 | 27 | 0.32 |
| 09 | 1ze2_C_C11_G12 | NAN | NANT | 0 | 0.40 |
| 10 | 1ze2_C_G12_A13 | NAN | NANT | 0 | 1.09 |
| 11 | 1ze2_C_A13_A14 | NAN | NANT | 0 | 0.87 |
| 12 | 1ze2_C_A14_U15 | NAN | NANT | 0 | 0.47 |
| 13 | 1ze2_C_U15_C16 | OPN | OP12 | 49 | 0.41 |
| 14 | 1ze2_C_C16_C17 | AAA | AA00 | 55 | 0.24 |
| 15 | 1ze2_C_C17_G18 | AAA | AA08 | 92 | 0.11 |
| 16 | 1ze2_C_G18_U19 | AAA | AA00 | 71 | 0.28 |
| 17 | 1ze2_C_U19_G20 | AAA | AA00 | 73 | 0.18 |
| 18 | 1ze2_C_G20_G21 | AAA | AA00 | 91 | 0.18 |
| 19 | 1ze2_C_G21_C22 | AAA | AA00 | 76 | 0.19 |
| 20 | 1ze2_D_G1_G2 | SYN | AAS1 | 24 | 0.64 |
| 21 | 1ze2_D_G2_C3 | AAw | AA01 | 48 | 0.42 |
| 22 | 1ze2_D_C3_C4 | AAA | AA08 | 89 | 0.13 |
| 23 | 1ze2_D_C4_A5 | AAA | AA00 | 87 | 0.17 |
| 24 | 1ze2_D_A5_C6 | AAA | AA00 | 79 | 0.21 |
| 25 | 1ze2_D_C6_G7 | AAA | AA00 | 81 | 0.14 |
| 26 | 1ze2_D_G7_G8 | AAA | AA00 | 82 | 0.26 |
| 27 | 1ze2_D_G8_U9 | A-B | AB04 | 35 | 0.43 |
| 28 | 1ze2_D_C11_G12 | NAN | NANT | 0 | 0.62 |
| 29 | 1ze2_D_G12_A13 | NAN | NANT | 0 | 1.14 |
| 30 | 1ze2_D_A13_A14 | NAN | NANT | 0 | 1.91 |
| 31 | 1ze2_D_A14_U15 | NAN | NANT | 0 | 0.85 |
| 32 | 1ze2_D_U15_C16 | NAN | NANT | 0 | 0.48 |
| 33 | 1ze2_D_C16_C17 | AAA | AA00 | 62 | 0.30 |
| 34 | 1ze2_D_C17_G18 | AAA | AA00 | 80 | 0.14 |
| 35 | 1ze2_D_G18_U19 | AAA | AA00 | 76 | 0.21 |
| 36 | 1ze2_D_U19_G20 | AAA | AA00 | 54 | 0.28 |
| 37 | 1ze2_D_G20_G21 | AAw | AA01 | 59 | 0.29 |
| 38 | 1ze2_D_G21_C22 | AAA | AA08 | 91 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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