Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1zdk_R_A3_C4 | NAN | NANT | 0 | 0.63 |
| 02 | 1zdk_R_C4_A5 | AAA | AA00 | 26 | 0.56 |
| 03 | 1zdk_R_A5_U6 | AAA | AA08 | 13 | 0.39 |
| 04 | 1zdk_R_U6_G7 | AAA | AA00 | 87 | 0.19 |
| 05 | 1zdk_R_G7_A8 | NAN | NANT | 0 | 0.69 |
| 06 | 1zdk_R_A8_G9 | NAN | NANT | 0 | 0.86 |
| 07 | 1zdk_R_G9_G10 | AAA | AA00 | 71 | 0.20 |
| 08 | 1zdk_R_G10_A11 | AAA | AA00 | 63 | 0.20 |
| 09 | 1zdk_R_A11_U12 | OPN | OP09 | 30 | 0.33 |
| 10 | 1zdk_R_U12_C13 | NAN | NANT | 0 | 0.47 |
| 11 | 1zdk_R_C13_A14 | NAN | NANT | 0 | 1.37 |
| 12 | 1zdk_R_A14_C15 | NAN | NANT | 0 | 0.57 |
| 13 | 1zdk_R_C15_C16 | AAA | AA00 | 42 | 0.27 |
| 14 | 1zdk_R_C16_C17 | AAA | AA00 | 55 | 0.29 |
| 15 | 1zdk_R_C17_A18 | AAA | AA08 | 85 | 0.23 |
| 16 | 1zdk_R_A18_U19 | AAA | AA08 | 46 | 0.33 |
| 17 | 1zdk_R_U19_G20 | AAA | AA08 | 32 | 0.58 |
| 18 | 1zdk_R_G20_U21 | NAN | NANT | 0 | 0.83 |
| 19 | 1zdk_S_A3_C4 | NAN | NANT | 0 | 0.64 |
| 20 | 1zdk_S_C4_A5 | AAA | AA04 | 44 | 0.47 |
| 21 | 1zdk_S_A5_U6 | AAA | AA00 | 30 | 0.25 |
| 22 | 1zdk_S_U6_G7 | AAA | AA00 | 28 | 0.25 |
| 23 | 1zdk_S_G7_A8 | NAN | NANT | 0 | 0.92 |
| 24 | 1zdk_S_A8_G9 | NAN | NANT | 0 | 0.79 |
| 25 | 1zdk_S_G9_G10 | AAA | AA08 | 27 | 0.34 |
| 26 | 1zdk_S_G10_A11 | AAA | AA00 | 25 | 0.32 |
| 27 | 1zdk_S_A11_U12 | OPN | OP09 | 9 | 0.38 |
| 28 | 1zdk_S_U12_C13 | NAN | NANT | 0 | 0.49 |
| 29 | 1zdk_S_C13_A14 | NAN | NANT | 0 | 0.54 |
| 30 | 1zdk_S_A14_C15 | NAN | NANT | 0 | 0.53 |
| 31 | 1zdk_S_C15_C16 | AAA | AA00 | 70 | 0.24 |
| 32 | 1zdk_S_C16_C17 | AAA | AA00 | 48 | 0.35 |
| 33 | 1zdk_S_C17_A18 | AAA | AA00 | 78 | 0.16 |
| 34 | 1zdk_S_A18_U19 | AAA | AA08 | 70 | 0.31 |
| 35 | 1zdk_S_U19_G20 | AAA | AA00 | 12 | 0.42 |
| 36 | 1zdk_S_G20_U21 | NAN | NANT | 0 | 0.79 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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