Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1zbh_F_G6_G7 | AAA | AA00 | 59 | 0.25 |
| 02 | 1zbh_F_G7_C8 | AAw | AA06 | 69 | 0.31 |
| 03 | 1zbh_F_C8_U9 | AAA | AA03 | 21 | 0.21 |
| 04 | 1zbh_F_U9_C10 | AAA | AA00 | 84 | 0.19 |
| 05 | 1zbh_F_C10_U11 | AAA | AA00 | 91 | 0.21 |
| 06 | 1zbh_F_U11_U12 | NAN | NANT | 0 | 0.95 |
| 07 | 1zbh_F_U12_U13 | NAN | NANT | 0 | 1.84 |
| 08 | 1zbh_F_U13_U14 | OPN | OP20 | 48 | 0.50 |
| 09 | 1zbh_F_U14_C15 | NAN | NANT | 0 | 2.03 |
| 10 | 1zbh_F_C15_A16 | OPN | OP11 | 44 | 0.51 |
| 11 | 1zbh_F_A16_G17 | AAA | AA08 | 87 | 0.24 |
| 12 | 1zbh_F_G17_A18 | AAA | AA08 | 63 | 0.22 |
| 13 | 1zbh_F_A18_G19 | AAw | AA01 | 72 | 0.18 |
| 14 | 1zbh_F_G19_C20 | AAA | AA00 | 65 | 0.18 |
| 15 | 1zbh_F_C20_C21 | NAN | NANT | 0 | 0.32 |
| 16 | 1zbh_E_G6_G7 | NAN | NANT | 0 | 0.54 |
| 17 | 1zbh_E_G7_C8 | AAw | AA06 | 75 | 0.34 |
| 18 | 1zbh_E_C8_U9 | NAN | NANT | 0 | 0.36 |
| 19 | 1zbh_E_U9_C10 | NAN | NANT | 0 | 0.31 |
| 20 | 1zbh_E_C10_U11 | AAA | AA00 | 84 | 0.19 |
| 21 | 1zbh_E_U11_U12 | NAN | NANT | 0 | 0.89 |
| 22 | 1zbh_E_U12_U13 | NAN | NANT | 0 | 0.73 |
| 23 | 1zbh_E_U13_U14 | OPN | OP20 | 40 | 0.46 |
| 24 | 1zbh_E_U14_C15 | NAN | NANT | 0 | 2.01 |
| 25 | 1zbh_E_C15_A16 | OPN | OP11 | 48 | 0.54 |
| 26 | 1zbh_E_A16_G17 | AAA | AA00 | 69 | 0.22 |
| 27 | 1zbh_E_G17_A18 | AAA | AA00 | 86 | 0.13 |
| 28 | 1zbh_E_A18_G19 | AAw | AA06 | 42 | 0.32 |
| 29 | 1zbh_E_G19_C20 | AAA | AA00 | 71 | 0.19 |
| 30 | 1zbh_E_C20_C21 | A-B | AB05 | 16 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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