Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
PURINE REPRESSOR-HYPOXANTHINE-MODIFIED-PURF-OPERATOR COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1zay_M_DA699_DA700 | BBB | BB01 | 15 | 0.29 |
| 02 | 1zay_M_DA700_DC701 | NAN | NANT | 0 | 0.65 |
| 03 | 1zay_M_DC701_DG702 | NAN | NANT | 0 | 0.47 |
| 04 | 1zay_M_DG702_DA703 | miB | BB15 | 17 | 0.44 |
| 05 | 1zay_M_DA703_DA704 | BBB | BB00 | 15 | 0.36 |
| 06 | 1zay_M_DA704_DA705 | BB2 | BB07 | 51 | 0.21 |
| 07 | 1zay_M_DA705_DA706 | BBB | BB00 | 31 | 0.21 |
| 08 | 1zay_M_DA706_DT707 | miB | BB10 | 41 | 0.40 |
| 09 | 1zay_M_DT707_1AP708 | A-B | AB03 | 45 | 0.57 |
| 10 | 1zay_M_1AP708_DT709 | B-A | BA10 | 76 | 0.31 |
| 11 | 1zay_M_DT709_DT710 | NAN | NANT | 0 | 0.40 |
| 12 | 1zay_M_DT710_DT711 | BBB | BB00 | 74 | 0.23 |
| 13 | 1zay_M_DT711_DT712 | B12 | BB04 | 73 | 0.19 |
| 14 | 1zay_M_DT712_DC713 | NAN | NANT | 0 | 0.53 |
| 15 | 1zay_M_DC713_DG714 | NAN | NANT | 0 | 0.40 |
| 16 | 1zay_M_DG714_DT715 | NAN | NANT | 0 | 0.52 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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